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 9QER | pdb_00009qer

Human pre-60S - State 1A


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth CI]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24eDomain
H [auth CH]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
G [auth CG]PF08154NLE (NUC135) domain (NLE)NLE (NUC135) domainThis domain is located N terminal to WD40 repeats. It is found in the microtubule-associated protein Swiss:Q12024 [1]. Domain
G [auth CG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
F [auth CF]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. Domain
F [auth CF]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
E [auth CE]PF10169LLP homolog (LLPH)LLP homolog- Family
D [auth CD]PF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1]. Domain
D [auth CD]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
D [auth CD]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins. Domain
DA [auth LY]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
DA [auth LY]PF00467KOW motif (KOW)KOW motif- Family
C [auth CC]PF08701GNL3L/Grn1 putative GTPase (GN3L_Grn1)GNL3L/Grn1 putative GTPase- Family
CA [auth LV]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
BA [auth LT]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain
BA [auth LT]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
AA [auth LS]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
Z [auth LQ]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
Y [auth LP]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
X [auth LO]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
W [auth LN]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
V [auth LM]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
T [auth LJ]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
T [auth LJ]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
B [auth CB]PF08153NGP1NT (NUC091) domain (NGP1NT)NGP1NT (NUC091) domainThis N terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 [1]. Domain
B [auth CB]PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
S [auth LH]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
Q [auth LF]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
Q [auth LF]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeThis entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain
P [auth LE]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
P [auth LE]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
O [auth LD]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
O [auth LD]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
O [auth LD]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins. Domain
N [auth LC]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
N [auth LC]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
K [auth CK]PF04939Ribosome biogenesis regulatory protein (RRS1) (RRS1)Ribosome biogenesis regulatory protein (RRS1)- Family
J [auth CJ]PF04427Brix domain (Brix)Brix domainDomain
A [auth CA]PF01912eIF-6 family (eIF-6)eIF-6 familyThis family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologues. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth CI]Probable ribosome biogenesis protein RLP24
HA [auth Lf]60S ribosomal protein L35a
H [auth CH]Ribosome biogenesis protein NSA2 homolog
G [auth CG]Notchless protein homolog 1-
F [auth CF]mRNA turnover protein 4 homolog
E [auth CE]Protein LLP homolog
NA [auth L5]28S rRNA---
D [auth CD]GTP-binding protein 4
MA [auth L8]5.8S rRNA---
LA [auth Lt]Large ribosomal subunit protein uL11
KA [auth Lr]60S ribosomal protein L28
JA [auth Li]60S ribosomal protein L36
IA [auth Lh]60S ribosomal protein L35
GA [auth Le]60S ribosomal protein L32
FA [auth Ld]60S ribosomal protein L31
EA [auth La]60S ribosomal protein L27a
DA [auth LY]60S ribosomal protein L26
C [auth CC]Guanine nucleotide-binding protein-like 3
CA [auth LV]60S ribosomal protein L23
BA [auth LT]60S ribosomal protein L21
AA [auth LS]60S ribosomal protein L18a
Z [auth LQ]60S ribosomal protein L18
Y [auth LP]60S ribosomal protein L17
X [auth LO]60S ribosomal protein L13a
W [auth LN]60S ribosomal protein L15
V [auth LM]60S ribosomal protein L14
U [auth LL]60S ribosomal protein L13
T [auth LJ]60S ribosomal protein L11
B [auth CB]Nucleolar GTP-binding protein 2 -
S [auth LH]60S ribosomal protein L9
R [auth LG]60S ribosomal protein L7a
Q [auth LF]Large ribosomal subunit protein uL30
P [auth LE]Large ribosomal subunit protein eL6
O [auth LD]60S ribosomal protein L5
N [auth LC]60S ribosomal protein L4
M [auth LB]60S ribosomal protein L3
L [auth L7]5S rRNA---
K [auth CK]Ribosome biogenesis regulatory protein homolog
J [auth CJ]Ribosome production factor 2 homolog
A [auth CA]Eukaryotic translation initiation factor 6

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth CI]IPR011017TRASH domainDomain
I [auth CI]IPR056366Large ribosomal subunit protein eL24Family
I [auth CI]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
I [auth CI]IPR055345Large ribosomal subunit protein eL24-like, archaeaFamily
I [auth CI]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
I [auth CI]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
HA [auth Lf]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
HA [auth Lf]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
HA [auth Lf]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
HA [auth Lf]IPR001780Large ribosomal subunit protein eL33Family
H [auth CH]IPR039411Ribosomal biogenesis NSA2 familyFamily
H [auth CH]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
G [auth CG]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
G [auth CG]IPR001632G-protein beta subunit-like, WD40 repeatsDomain
G [auth CG]IPR001680WD40 repeatRepeat
G [auth CG]IPR019775WD40 repeat, conserved siteConserved Site
G [auth CG]IPR012972NLEDomain
G [auth CG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
G [auth CG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
F [auth CF]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
F [auth CF]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
F [auth CF]IPR001790Large ribosomal subunit protein uL10, N-terminalDomain
F [auth CF]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
F [auth CF]IPR033867Ribosome assembly factor Mrt4Family
E [auth CE]IPR018784LLP homolog-likeFamily
D [auth CD]IPR024926Nucleolar GTP-binding protein 1Family
D [auth CD]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth CD]IPR005225Small GTP-binding domainDomain
D [auth CD]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
D [auth CD]IPR012973NOG, C-terminalDomain
D [auth CD]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
D [auth CD]IPR041623NOG1, N-terminal helical domainDomain
D [auth CD]IPR006073GTP binding domainDomain
LA [auth Lt]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
LA [auth Lt]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
LA [auth Lt]IPR000911Ribosomal protein uL11Family
LA [auth Lt]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
LA [auth Lt]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
LA [auth Lt]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
KA [auth Lr]IPR029004Ribosomal eL28/Mak16Domain
KA [auth Lr]IPR002672Large ribosomal subunit protein eL28Family
JA [auth Li]IPR000509Large ribosomal subunit protein eL36Family
JA [auth Li]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
IA [auth Lh]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
IA [auth Lh]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily
IA [auth Lh]IPR001854Large ribosomal subunit protein uL29Family
IA [auth Lh]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
GA [auth Le]IPR001515Large ribosomal subunit protein eL32Family
GA [auth Le]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
GA [auth Le]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
FA [auth Ld]IPR000054Large ribosomal subunit protein eL31Family
FA [auth Ld]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
FA [auth Ld]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
EA [auth La]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
EA [auth La]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
EA [auth La]IPR021131Large ribosomal subunit protein uL15/eL18Domain
EA [auth La]IPR030878Large ribosomal subunit protein uL15Family
EA [auth La]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
DA [auth LY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
DA [auth LY]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
DA [auth LY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
DA [auth LY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
DA [auth LY]IPR005824KOWDomain
DA [auth LY]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
C [auth CC]IPR050755TRAFAC YlqF/YawG GTPases, Ribosome MaturationFamily
C [auth CC]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
C [auth CC]IPR006073GTP binding domainDomain
C [auth CC]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
C [auth CC]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
CA [auth LV]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
CA [auth LV]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
CA [auth LV]IPR000218Large ribosomal subunit protein uL14Family
BA [auth LT]IPR001147Large ribosomal subunit protein eL21Family
BA [auth LT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth LT]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
BA [auth LT]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
AA [auth LS]IPR028877Large ribosomal subunit protein eL20Family
AA [auth LS]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
AA [auth LS]IPR023573Large ribosomal subunit protein eL20 domainDomain
Z [auth LQ]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
Z [auth LQ]IPR000039Large ribosomal subunit protein eL18Family
Z [auth LQ]IPR021131Large ribosomal subunit protein uL15/eL18Domain
Z [auth LQ]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
Y [auth LP]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
Y [auth LP]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
Y [auth LP]IPR001063Large ribosomal subunit protein uL22Family
Y [auth LP]IPR057265Large ribosomal subunit protein uL22, archaeaFamily
Y [auth LP]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
X [auth LO]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
X [auth LO]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
X [auth LO]IPR005822Large ribosomal subunit protein uL13Family
X [auth LO]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
W [auth LN]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
W [auth LN]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
W [auth LN]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
W [auth LN]IPR000439Large ribosomal subunit protein eL15Family
V [auth LM]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
V [auth LM]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
V [auth LM]IPR039660Large ribosomal subunit protein eL14Family
V [auth LM]IPR002784Large ribosomal subunit protein eL14 domainDomain
U [auth LL]IPR001380Large ribosomal subunit protein eL13Family
U [auth LL]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
T [auth LJ]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
T [auth LJ]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
T [auth LJ]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
T [auth LJ]IPR057266Large ribosomal subunit protein uL5, eukaryota/archaeaFamily
T [auth LJ]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
T [auth LJ]IPR002132Large ribosomal subunit protein uL5Family
B [auth CB]IPR050755TRAFAC YlqF/YawG GTPases, Ribosome MaturationFamily
B [auth CB]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
B [auth CB]IPR024929Nucleolar GTP-binding protein 2, circularly permuted GTPase motifDomain
B [auth CB]IPR006073GTP binding domainDomain
B [auth CB]IPR012971Nucleolar GTP-binding protein 2, N-terminal domainDomain
B [auth CB]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
B [auth CB]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
S [auth LH]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
S [auth LH]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
S [auth LH]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
S [auth LH]IPR000702Large ribosomal subunit protein uL6-likeFamily
R [auth LG]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
R [auth LG]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
R [auth LG]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
R [auth LG]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
R [auth LG]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
R [auth LG]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
Q [auth LF]IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
Q [auth LF]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
Q [auth LF]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
Q [auth LF]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
Q [auth LF]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
Q [auth LF]IPR039699Large ribosomal subunit protein uL30Family
Q [auth LF]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
P [auth LE]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
P [auth LE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
P [auth LE]IPR000915Large ribosomal subunit protein eL6Family
P [auth LE]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
P [auth LE]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
P [auth LE]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
O [auth LD]IPR057268Large ribosomal subunit protein uL18Family
O [auth LD]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
O [auth LD]IPR005485Large ribosomal subunit protein uL18, eukaryota/archaeaFamily
N [auth LC]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
N [auth LC]IPR002136Large ribosomal subunit protein uL4Family
N [auth LC]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
N [auth LC]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
N [auth LC]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
M [auth LB]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
M [auth LB]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
M [auth LB]IPR000597Large ribosomal subunit protein uL3Family
M [auth LB]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
M [auth LB]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
K [auth CK]IPR007023Ribosomal biogenesis regulatory proteinFamily
J [auth CJ]IPR039770Ribosome biogenesis protein Rpf2Family
J [auth CJ]IPR007109Brix domainDomain
A [auth CA]IPR002769Translation initiation factor IF6Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I [auth CI]:  Q9UHA3
HA [auth Lf]:  P18077
H [auth CH]:  O95478
G [auth CG]:  Q9NVX2
F [auth CF]:  Q9UKD2
E [auth CE]:  Q9BRT6
D [auth CD]:  Q9BZE4
LA [auth Lt]:  P30050
KA [auth Lr]:  P46779
JA [auth Li]:  Q9Y3U8
IA [auth Lh]:  P42766
GA [auth Le]:  P62910
FA [auth Ld]:  P62899
EA [auth La]:  P46776
DA [auth LY]:  P61254
C [auth CC]:  Q9BVP2
CA [auth LV]:  P62829
BA [auth LT]:  P46778
Z [auth LQ]:  Q07020
Y [auth LP]:  P18621
X [auth LO]:  P40429
W [auth LN]:  P61313
V [auth LM]:  P50914
U [auth LL]:  P26373
T [auth LJ]:  P62913
B [auth CB]:  Q13823
S [auth LH]:  P32969
R [auth LG]:  P62424
Q [auth LF]:  P18124
P [auth LE]:  Q02878
O [auth LD]:  P46777
N [auth LC]:  P36578
M [auth LB]:  P39023
K [auth CK]:  Q15050
J [auth CJ]:  Q9H7B2
A [auth CA]:  P56537