Annotations: 9P4N

Cryo-EM structure of AAV9-X1.1 complexed to AAVR-PKD2

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	ssDNA viruses	8093948	3000931	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth R]	PF22352	K319L-like, PKD domain (K319L-like_PKD)	K319L-like, PKD domain	This entry represents the PKD domain of Dyslexia-associated protein KIAA0319-like protein, in which it is found in four copies. This entry also includes Kunitz-type protease inhibitor 1 and LRP11 from human.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Capsid protein VP1	structural molecule activity	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid
B [auth R]	Dyslexia-associated protein KIAA0319-like protein	-	response to auditory stimulus response to stimulus response to mechanical stimulus response to abiotic stimulus response to external stimulus developmental process multicellular organismal process neuron migration cellular developmental process nervous system development generation of neurons neurogenesis multicellular organism development cell differentiation response to auditory stimulus response to stimulus response to mechanical stimulus response to abiotic stimulus response to external stimulus developmental process multicellular organismal process neuron migration cellular developmental process nervous system development generation of neurons neurogenesis multicellular organism development cell differentiation anatomical structure development cellular process cell migration cell motility animal gross anatomical part developmental process system development	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle membrane Golgi apparatus endomembrane system Golgi membrane membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle membrane Golgi apparatus endomembrane system Golgi membrane bounding membrane of organelle organelle membrane Golgi apparatus subcompartment organelle subcompartment trans-Golgi network membrane trans-Golgi network cell periphery plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR013607	Phospholipase A2-like domain	Domain
A	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily
B [auth R]	IPR022409	PKD/Chitinase domain	Domain
B [auth R]	IPR000601	PKD domain	Domain
B [auth R]	IPR035986	PKD domain superfamily	Homologous Superfamily
B [auth R]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B [auth R]	IPR056502	KIAA0319-like, C-terminal domain	Domain
B [auth R]	IPR029865	Dyslexia-associated protein KIAA0319-like	Family
B [auth R]	IPR013980	MANSC domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9P4N | pdb_00009p4n

Cryo-EM structure of AAV9-X1.1 complexed to AAVR-PKD2

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage