Annotations: 9OX8

NHEJ Short-range complex with Polymerase lambda

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
M, Q	DNA (34-MER)	-	-	-
R [auth T], S [auth U]	Protein PAXX	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity molecular adaptor activity DNA polymerase binding enzyme binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process double-strand break repair double-strand break repair via nonhomologous end joining primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process metabolic process macromolecule metabolic process cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process double-strand break repair double-strand break repair via nonhomologous end joining primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process metabolic process macromolecule metabolic process DNA repair	protein-containing complex nonhomologous end joining complex catalytic complex intracellular protein-containing complex DNA repair complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle site of double-strand break organelle membraneless organelle site of DNA damage intracellular membraneless organelle protein-containing complex nonhomologous end joining complex catalytic complex intracellular protein-containing complex DNA repair complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle site of double-strand break organelle membraneless organelle site of DNA damage intracellular membraneless organelle chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
L, N	DNA (34-MER)	-	-	-
G, H, O, P	DNA repair protein XRCC4	protein binding binding FHA domain binding protein domain specific binding protein-macromolecule adaptor activity molecular adaptor activity DNA binding nucleic acid binding enzyme binding identical protein binding	response to X-ray response to ionizing radiation response to stimulus response to radiation response to abiotic stimulus localization protein localization to chromosome protein localization to organelle macromolecule localization protein localization to site of double-strand break intracellular protein localization DNA double-strand break attachment to nuclear envelope chromosome localization organelle localization response to X-ray response to ionizing radiation response to stimulus response to radiation response to abiotic stimulus localization protein localization to chromosome protein localization to organelle macromolecule localization protein localization to site of double-strand break intracellular protein localization DNA double-strand break attachment to nuclear envelope chromosome localization organelle localization chromosome attachment to the nuclear envelope cellular process cell cycle cell cycle process positive regulation of molecular function regulation of molecular function regulation of catalytic activity biological regulation positive regulation of catalytic activity positive regulation of ligase activity cellular response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process base-excision repair cellular response to stress DNA damage response response to stress metabolic process macromolecule metabolic process DNA repair double-strand break repair immune system development multicellular organismal process immunoglobulin production somatic cell DNA recombination multicellular organism development somatic recombination of immunoglobulin gene segments V(D)J recombination anatomical structure development somatic diversification of immune receptors system development developmental process production of molecular mediator of immune response DNA recombination gene expression macromolecule biosynthetic process somatic diversification of immunoglobulins immunoglobulin V(D)J recombination biosynthetic process immune system process somatic diversification of immune receptors via germline recombination within a single locus double-strand break repair via nonhomologous end joining	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex nonhomologous end joining complex catalytic complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle organelle intracellular protein-containing complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex nonhomologous end joining complex catalytic complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle organelle intracellular protein-containing complex DNA ligase IV complex DNA repair complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen DNA-dependent protein kinase-DNA ligase 4 complex site of double-strand break membraneless organelle site of DNA damage intracellular membraneless organelle chromosome
E, F	DNA polymerase lambda	catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid 5'-deoxyribose-5-phosphate lyase activity lyase activity catalytic activity carbon-oxygen lyase activity DNA-directed DNA polymerase activity DNA polymerase activity transferase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups DNA binding binding nucleic acid binding catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid 5'-deoxyribose-5-phosphate lyase activity lyase activity catalytic activity carbon-oxygen lyase activity DNA-directed DNA polymerase activity DNA polymerase activity transferase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups DNA binding binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process immune system development developmental process production of molecular mediator of immune response multicellular organismal process immunoglobulin production somatic diversification of immune receptors via somatic mutation nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process immune system development developmental process production of molecular mediator of immune response multicellular organismal process immunoglobulin production somatic diversification of immune receptors via somatic mutation gene expression macromolecule biosynthetic process somatic diversification of immunoglobulins multicellular organism development biosynthetic process immune system process anatomical structure development somatic diversification of immune receptors somatic hypermutation of immunoglobulin genes system development nucleobase-containing compound biosynthetic process nucleic acid biosynthetic process DNA biosynthetic process cellular response to stimulus double-strand break repair response to stimulus DNA recombination cellular response to stress DNA damage response response to stress recombinational repair double-strand break repair via homologous recombination DNA repair nucleotide-excision repair base-excision repair, gap-filling base-excision repair double-strand break repair via nonhomologous end joining	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen site of double-strand break membraneless organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen site of double-strand break membraneless organelle site of DNA damage intracellular membraneless organelle chromosome
D, K	X-ray repair cross-complementing protein 5	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding RNA binding U3 snoRNA binding snoRNA binding ATP-dependent activity, acting on DNA catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding RNA binding U3 snoRNA binding snoRNA binding ATP-dependent activity, acting on DNA catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity ATP-dependent activity telomeric repeat DNA binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein-containing complex binding DNA-(apurinic or apyrimidinic site) endonuclease activity endonuclease activity DNA nuclease activity DNA endonuclease activity nuclease activity class I DNA-(apurinic or apyrimidinic site) endonuclease activity lyase activity carbon-oxygen lyase activity ubiquitin protein ligase binding protein binding ubiquitin-like protein ligase binding enzyme binding nucleic acid conformation isomerase activity isomerase activity DNA helicase activity helicase activity 3'-5' DNA helicase activity macromolecular conformation isomerase activity DNA end binding damaged DNA binding enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process biological process involved in interspecies interaction between organisms immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process biological process involved in interspecies interaction between organisms immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism innate immune response response to external biotic stimulus regulation of biological process cell population proliferation regulation of cellular process regulation of smooth muscle cell proliferation regulation of cell population proliferation biological regulation muscle cell proliferation smooth muscle cell proliferation RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process macromolecule metabolic process localization protein localization to chromosome protein localization to organelle macromolecule localization protein localization to chromosome, telomeric region intracellular protein localization negative regulation of biological process regulation of primary metabolic process negative regulation of RNA biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription negative regulation of metabolic process regulation of macromolecule metabolic process regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus regulation of response to external stimulus positive regulation of biological process positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of immune response regulation of response to stress regulation of immune system process positive regulation of immune system process positive regulation of innate immune response regulation of innate immune response regulation of response to stimulus positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response telomere maintenance via telomerase telomere organization chromosome organization DNA metabolic process RNA-templated DNA biosynthetic process telomere maintenance via telomere lengthening telomere maintenance cellular component organization organelle organization cellular component organization or biogenesis DNA biosynthetic process cellular response to ionizing radiation cellular response to radiation cellular response to environmental stimulus response to ionizing radiation cellular response to gamma radiation response to radiation response to abiotic stimulus cellular response to abiotic stimulus response to gamma radiation regulation of telomere maintenance regulation of cellular component organization regulation of t-circle formation cellular component biogenesis cellular component assembly negative regulation of cellular component organization formation of extrachromosomal circular DNA regulation of chromosome organization regulation of cellular component biogenesis regulation of organelle organization negative regulation of t-circle formation telomere maintenance via telomere trimming t-circle formation negative regulation of DNA metabolic process regulation of DNA metabolic process DNA recombination recombinational repair DNA repair double-strand break repair double-strand break repair via nonhomologous end joining ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis ribosome biogenesis protein-RNA complex organization cytosolic ribosome assembly protein-containing complex assembly small-subunit processome assembly cytosolic small ribosomal subunit assembly ribosome assembly	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle protein-containing complex organelle nucleus nuclear protein-containing complex Ku70:Ku80 complex intracellular membrane-bounded organelle preribosome cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle protein-containing complex organelle nucleus nuclear protein-containing complex Ku70:Ku80 complex intracellular membrane-bounded organelle preribosome membrane-enclosed lumen intracellular membraneless organelle small-subunit processome nucleolus intracellular organelle lumen organelle lumen ribonucleoprotein complex membraneless organelle nuclear lumen chromosome chromosome, telomeric region chromosomal region nucleoplasm nonhomologous end joining complex catalytic complex intracellular protein-containing complex DNA repair complex extracellular region DNA-dependent protein kinase-DNA ligase 4 complex vesicle lumen intracellular vesicle cytoplasmic vesicle lumen secretory granule lumen endomembrane system cytoplasmic vesicle secretory granule secretory vesicle vesicle protein-DNA complex telomere cap complex chromosome, telomeric repeat region nuclear telomere cap complex site of DNA damage
C, J	X-ray repair cross-complementing protein 6	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid 5'-deoxyribose-5-phosphate lyase activity lyase activity catalytic activity carbon-oxygen lyase activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid 5'-deoxyribose-5-phosphate lyase activity lyase activity catalytic activity carbon-oxygen lyase activity ATP-dependent activity, acting on DNA ATP-dependent activity telomeric repeat DNA binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein-containing complex binding DNA-(apurinic or apyrimidinic site) endonuclease activity endonuclease activity DNA nuclease activity DNA endonuclease activity nuclease activity class I DNA-(apurinic or apyrimidinic site) endonuclease activity nucleic acid conformation isomerase activity isomerase activity DNA helicase activity helicase activity 3'-5' DNA helicase activity macromolecular conformation isomerase activity scaffold protein binding protein binding cyclin binding RNA binding damaged DNA binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides	biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus regulation of biological process biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus regulation of biological process cell population proliferation regulation of cellular process regulation of smooth muscle cell proliferation regulation of cell population proliferation biological regulation muscle cell proliferation cellular process smooth muscle cell proliferation RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process macromolecule metabolic process response to X-ray cellular response to stimulus cellular response to ionizing radiation cellular response to radiation cellular response to environmental stimulus cellular response to X-ray response to ionizing radiation response to radiation response to abiotic stimulus cellular response to abiotic stimulus response to osmotic stress cellular response to salt stress cellular hyperosmotic salinity response cellular response to chemical stress cellular response to osmotic stress response to salt stress hyperosmotic salinity response cellular response to chemical stimulus hyperosmotic response cellular hyperosmotic response cellular response to stress response to chemical regulation of leukocyte differentiation multicellular organismal process cellular developmental process regulation of developmental process regulation of leukocyte activation positive regulation of biological process cell development regulation of cell activation regulation of cell differentiation mononuclear cell differentiation lymphocyte differentiation lymphocyte activation regulation of cell development leukocyte activation positive regulation of developmental process multicellular organism development positive regulation of lymphocyte activation positive regulation of cell activation positive regulation of hemopoiesis positive regulation of cell differentiation cell differentiation anatomical structure development positive regulation of leukocyte activation regulation of immune system process regulation of multicellular organismal process positive regulation of immune system process positive regulation of cellular process developmental process regulation of lymphocyte differentiation regulation of multicellular organismal development hemopoiesis cell activation positive regulation of cell development regulation of hemopoiesis positive regulation of multicellular organismal process positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation leukocyte differentiation regulation of lymphocyte activation positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process regulation of primary metabolic process positive regulation of metabolic process regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process regulation of gene expression positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of biological process negative regulation of RNA biosynthetic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus regulation of response to external stimulus positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of immune response regulation of response to stress positive regulation of innate immune response regulation of innate immune response regulation of response to stimulus positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response cellular response to gamma radiation response to gamma radiation double-strand break repair via classical nonhomologous end joining double-strand break repair double-strand break repair via nonhomologous end joining DNA metabolic process DNA damage response DNA repair telomere organization chromosome organization telomere maintenance cellular component organization organelle organization cellular component organization or biogenesis DNA recombination recombinational repair	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol protein-containing complex transcription regulator complex membrane-bounded organelle intracellular organelle organelle nucleus nuclear protein-containing complex Ku70:Ku80 complex intracellular membrane-bounded organelle cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol protein-containing complex transcription regulator complex membrane-bounded organelle intracellular organelle organelle nucleus nuclear protein-containing complex Ku70:Ku80 complex intracellular membrane-bounded organelle membraneless organelle intracellular membraneless organelle chromosome chromosome, telomeric region chromosomal region membrane-enclosed lumen nucleolus intracellular organelle lumen organelle lumen nuclear lumen intracellular vesicle ficolin-1-rich granule endomembrane system cytoplasmic vesicle ficolin-1-rich granule lumen secretory granule secretory vesicle vesicle nucleoplasm nonhomologous end joining complex catalytic complex intracellular protein-containing complex DNA repair complex extracellular region DNA-dependent protein kinase-DNA ligase 4 complex vesicle lumen cytoplasmic vesicle lumen secretory granule lumen protein-DNA complex telomere cap complex chromosome, telomeric repeat region nuclear telomere cap complex
B, I	Non-homologous end-joining factor 1	DNA binding binding nucleic acid binding DNA end binding protein binding DNA polymerase binding enzyme binding	response to ionizing radiation response to stimulus response to radiation response to abiotic stimulus developmental process multicellular organismal process cellular developmental process hemopoiesis B cell activation cell activation cell development mononuclear cell differentiation lymphocyte differentiation lymphocyte activation response to ionizing radiation response to stimulus response to radiation response to abiotic stimulus developmental process multicellular organismal process cellular developmental process hemopoiesis B cell activation cell activation cell development mononuclear cell differentiation lymphocyte differentiation lymphocyte activation leukocyte activation B cell differentiation cell differentiation immune system process anatomical structure development cellular process leukocyte differentiation multicellular organism development central nervous system development nervous system development system development positive regulation of molecular function regulation of molecular function regulation of catalytic activity biological regulation positive regulation of catalytic activity positive regulation of ligase activity immune system development immunoglobulin production somatic cell DNA recombination nucleobase-containing compound metabolic process somatic recombination of immunoglobulin gene segments V(D)J recombination somatic diversification of immune receptors production of molecular mediator of immune response DNA recombination primary metabolic process DNA metabolic process gene expression macromolecule biosynthetic process nucleic acid metabolic process somatic diversification of immunoglobulins immunoglobulin V(D)J recombination biosynthetic process somatic diversification of immune receptors via germline recombination within a single locus metabolic process macromolecule metabolic process T cell activation T cell differentiation cellular response to stimulus double-strand break repair double-strand break repair via nonhomologous end joining cellular response to stress DNA damage response response to stress DNA repair telomere organization chromosome organization telomere maintenance cellular component organization organelle organization cellular component organization or biogenesis	protein-containing complex nonhomologous end joining complex catalytic complex intracellular protein-containing complex DNA repair complex membrane-bounded organelle intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle DNA-dependent protein kinase-DNA ligase 4 complex protein-containing complex nonhomologous end joining complex catalytic complex intracellular protein-containing complex DNA repair complex membrane-bounded organelle intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle DNA-dependent protein kinase-DNA ligase 4 complex membrane-enclosed lumen intracellular membraneless organelle nucleolus intracellular organelle lumen organelle lumen fibrillar center membraneless organelle nuclear lumen DNA ligase IV complex site of double-strand break site of DNA damage chromosome nucleoplasm
A, T [auth X]	DNA ligase 4	ligase activity, forming phosphoric ester bonds DNA ligase (ATP) activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity DNA ligase activity ligase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding ligase activity, forming phosphoric ester bonds DNA ligase (ATP) activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity DNA ligase activity ligase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding cation binding magnesium ion binding metal ion binding	developmental process multicellular organism development multicellular organismal process central nervous system development anatomical structure development nervous system development system development cellular process cell division response to X-ray response to ionizing radiation response to stimulus response to radiation response to abiotic stimulus developmental process multicellular organism development multicellular organismal process central nervous system development anatomical structure development nervous system development system development cellular process cell division response to X-ray response to ionizing radiation response to stimulus response to radiation response to abiotic stimulus cell population proliferation cellular response to stimulus cellular response to ionizing radiation cellular response to radiation cellular response to abiotic stimulus cellular response to environmental stimulus embryo development ending in birth or egg hatching chordate embryonic development embryo development in utero embryonic development cellular developmental process hemopoiesis cell activation cell development mononuclear cell differentiation lymphocyte activation lymphocyte differentiation leukocyte activation T cell differentiation in thymus T cell activation immune system process cell differentiation T cell differentiation leukocyte differentiation primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process metabolic process macromolecule metabolic process DNA biosynthetic process base-excision repair cellular response to stress DNA damage response response to stress DNA repair somatic stem cell population maintenance maintenance of cell number stem cell population maintenance positive regulation of nervous system development regulation of cellular process regulation of developmental process positive regulation of biological process regulation of cell differentiation regulation of neurogenesis regulation of cell development regulation of nervous system development positive regulation of developmental process neurogenesis positive regulation of cell differentiation positive regulation of neurogenesis regulation of multicellular organismal process positive regulation of cellular process regulation of multicellular organismal development regulation of biological process biological regulation positive regulation of cell development positive regulation of multicellular organismal process immune system development adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity immunoglobulin production immunoglobulin production involved in immunoglobulin-mediated immune response somatic cell DNA recombination B cell activation involved in immune response cell activation involved in immune response somatic diversification of immunoglobulins involved in immune response somatic recombination of immunoglobulin gene segments leukocyte activation involved in immune response leukocyte mediated immunity somatic diversification of immune receptors lymphocyte activation involved in immune response somatic recombination of immunoglobulin genes involved in immune response production of molecular mediator of immune response immune response B cell activation DNA recombination gene expression immunoglobulin mediated immune response adaptive immune response immune effector process somatic diversification of immunoglobulins somatic diversification of immune receptors via germline recombination within a single locus B cell mediated immunity isotype switching V(D)J recombination T cell receptor V(D)J recombination somatic diversification of T cell receptor genes somatic recombination of T cell receptor gene segments pro-B cell differentiation lymphoid progenitor cell differentiation hematopoietic progenitor cell differentiation double-strand break repair via classical nonhomologous end joining double-strand break repair double-strand break repair via nonhomologous end joining cellular component organization organelle organization chromosome organization cellular component organization or biogenesis fibroblast proliferation positive regulation of cell population proliferation regulation of fibroblast proliferation regulation of cell population proliferation positive regulation of fibroblast proliferation establishment of integrated proviral latency viral latency viral process establishment of viral latency neuron apoptotic process negative regulation of neuron apoptotic process negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death regulation of neuron apoptotic process single strand break repair nucleotide-excision repair, DNA gap filling nucleotide-excision repair response to gamma radiation immunoglobulin V(D)J recombination positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization regulation of chromosome organization regulation of organelle organization positive regulation of chromosome organization	membrane-bounded organelle protein-containing complex nonhomologous end joining complex intracellular anatomical structure catalytic complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle intracellular protein-containing complex DNA ligase IV complex DNA repair complex membrane-bounded organelle protein-containing complex nonhomologous end joining complex intracellular anatomical structure catalytic complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle intracellular protein-containing complex DNA ligase IV complex DNA repair complex membraneless organelle intracellular membraneless organelle chromosome chromosome, telomeric region chromosomal region condensed chromosome membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen DNA-dependent protein kinase-DNA ligase 4 complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
R [auth T], S [auth U]	IPR027873	Protein PAXX	Family
R [auth T], S [auth U]	IPR054134	Protein PAXX, N-terminal domain	Domain
G, H, O, P	IPR053963	XRCC4, C-terminal domain	Domain
G, H, O, P	IPR038051	XRCC4-like, N-terminal domain superfamily	Homologous Superfamily
G, H, O, P	IPR009089	XRCC4, N-terminal domain superfamily	Homologous Superfamily
G, H, O, P	IPR014751	DNA repair protein XRCC4-like, C-terminal	Homologous Superfamily
G, H, O, P	IPR053961	XRCC4, N-terminal domain	Domain
G, H, O, P	IPR010585	DNA repair protein XRCC4	Family
G, H, O, P	IPR053962	XRCC4, coiled-coil domain	Domain
E, F	IPR037160	DNA polymerase, thumb domain superfamily	Homologous Superfamily
E, F	IPR010996	Crossover junction endonuclease MUS81-like, HHH domain	Domain
E, F	IPR019843	DNA polymerase family X, binding site	Binding Site
E, F	IPR029398	DNA polymerase beta, thumb domain	Domain
E, F	IPR002008	DNA polymerase family X, beta-like	Family
E, F	IPR043519	Nucleotidyltransferase superfamily	Homologous Superfamily
E, F	IPR001357	BRCT domain	Domain
E, F	IPR027421	DNA polymerase lambda lyase domain superfamily	Homologous Superfamily
E, F	IPR036420	BRCT domain superfamily	Homologous Superfamily
E, F	IPR028207	DNA polymerase beta, palm domain	Domain
E, F	IPR022312	DNA polymerase family X	Family
E, F	IPR018944	DNA polymerase lambda, fingers domain	Domain
E, F	IPR002054	DNA-directed DNA polymerase X	Domain
D, K	IPR036494	Ku, C-terminal domain superfamily	Homologous Superfamily
D, K	IPR016194	SPOC-like, C-terminal domain superfamily	Homologous Superfamily
D, K	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily
D, K	IPR002035	von Willebrand factor, type A	Domain
D, K	IPR005161	Ku70/Ku80, N-terminal alpha/beta	Domain
D, K	IPR014893	Ku, C-terminal	Domain
D, K	IPR006164	Ku70/Ku80, DNA-binding domain	Domain
D, K	IPR005160	Ku70/Ku80 C-terminal arm	Domain
D, K	IPR024193	Ku80	Family
C, J	IPR016194	SPOC-like, C-terminal domain superfamily	Homologous Superfamily
C, J	IPR027388	Ku70, bridge and pillars domain superfamily	Homologous Superfamily
C, J	IPR036361	SAP domain superfamily	Homologous Superfamily
C, J	IPR006165	Ku70	Family
C, J	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily
C, J	IPR005161	Ku70/Ku80, N-terminal alpha/beta	Domain
C, J	IPR006164	Ku70/Ku80, DNA-binding domain	Domain
C, J	IPR047087	Ku70, core domain	Domain
C, J	IPR005160	Ku70/Ku80 C-terminal arm	Domain
C, J	IPR003034	SAP domain	Domain
B, I	IPR052287	Non-homologous end-joining factor	Family
B, I	IPR015381	XLF-like, N-terminal	Domain
B, I	IPR038051	XRCC4-like, N-terminal domain superfamily	Homologous Superfamily
B, I	IPR053829	XLF-like, coiled-coil region	Domain
A, T [auth X]	IPR029710	DNA ligase 4	Family
A, T [auth X]	IPR012310	DNA ligase, ATP-dependent, central	Domain
A, T [auth X]	IPR012308	DNA ligase, ATP-dependent, N-terminal	Domain
A, T [auth X]	IPR044125	DNA Ligase 4, adenylation domain	Domain
A, T [auth X]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
A, T [auth X]	IPR021536	DNA ligase IV domain	Domain
A, T [auth X]	IPR036599	DNA ligase, ATP-dependent, N-terminal domain superfamily	Homologous Superfamily
A, T [auth X]	IPR001357	BRCT domain	Domain
A, T [auth X]	IPR036420	BRCT domain superfamily	Homologous Superfamily
A, T [auth X]	IPR016059	DNA ligase, ATP-dependent, conserved site	Conserved Site
A, T [auth X]	IPR000977	DNA ligase, ATP-dependent	Family
A, T [auth X]	IPR012309	DNA ligase, ATP-dependent, C-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
G, H, O, P	: Q13426	short stature, microcephaly, and endocrine dysfunction DNA ligase IV deficiency Chromosome Aberrations pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia schizophrenia astrocytic tumor congestive heart failure isolated growth hormone deficiency type IA malignant mesothelioma microcephalic primordial dwarfism-insulin resistance syndrome pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma primitive neuroectodermal tumor malignant colon neoplasm malignant pancreatic neoplasm short stature, microcephaly, and endocrine dysfunction DNA ligase IV deficiency Chromosome Aberrations pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia schizophrenia astrocytic tumor congestive heart failure isolated growth hormone deficiency type IA malignant mesothelioma microcephalic primordial dwarfism-insulin resistance syndrome pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma primitive neuroectodermal tumor malignant colon neoplasm malignant pancreatic neoplasm oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm pituitary cancer psoriasis tuberculosis intellectual disability malignant ependymoma medulloblastoma osteosarcoma
E, F	: Q9UGP5	osteosarcoma xeroderma pigmentosum
D, K	: P13010	primitive neuroectodermal tumor Adenocarcinoma of Lung atypical teratoid rhabdoid tumor large cell medulloblastoma lupus erythematosus medulloblastoma ovarian cancer systemic lupus erythematosus breast cancer glioblastoma lung adenocarcinoma lymphoplasmacytic lymphoma myopathy plasma cell myeloma breast carcinoma primitive neuroectodermal tumor Adenocarcinoma of Lung atypical teratoid rhabdoid tumor large cell medulloblastoma lupus erythematosus medulloblastoma ovarian cancer systemic lupus erythematosus breast cancer glioblastoma lung adenocarcinoma lymphoplasmacytic lymphoma myopathy plasma cell myeloma breast carcinoma Hodgkins lymphoma lung cancer malignant glioma osteosarcoma
C, J	: P12956	Adenocarcinoma of Lung lupus erythematosus systemic lupus erythematosus lymphoplasmacytic lymphoma lung adenocarcinoma ovarian cancer
B, I	: Q9H9Q4	Cernunnos-XLF deficiency microcephaly DNA ligase IV deficiency Primary microcephaly intellectual disability
A, T [auth X]	: P49917	DNA ligase IV deficiency plasma cell myeloma Omenn syndrome Dubowitz syndrome progressive supranuclear palsy Alzheimer disease hematopoietic and lymphoid system neoplasm leukemia pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia plasma cell neoplasm severe combined immunodeficiency due to DCLRE1C deficiency atypical teratoid rhabdoid tumor Gaucher disease intellectual disability microcephaly DNA ligase IV deficiency plasma cell myeloma Omenn syndrome Dubowitz syndrome progressive supranuclear palsy Alzheimer disease hematopoietic and lymphoid system neoplasm leukemia pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia plasma cell neoplasm severe combined immunodeficiency due to DCLRE1C deficiency atypical teratoid rhabdoid tumor Gaucher disease intellectual disability microcephaly osteosarcoma Pick disease Primary microcephaly glioblastoma large cell medulloblastoma myeloid neoplasm pancreatic intraductal papillary-mucinous neoplasm

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9OX8 | pdb_00009ox8

NHEJ Short-range complex with Polymerase lambda

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation