9NGY | pdb_00009ngy

In situ cryo-EM structure of protochannel (DotA-IcmX) of the Legionella Dot/Icm T4SS machine

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
O [auth OP1]RVPe9ngyOP11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
N [auth NP1]RVPe9ngyNP11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
M [auth MP1]RVPe9ngyMP11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
L [auth LP1]RVPe9ngyLP11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
K [auth KP1]RVPe9ngyKP11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth FP1],
G [auth GP1],
H [auth HP1],
I [auth IP1],
J [auth JP1]		PF11388Phagosome trafficking protein DotA (DotA)Phagosome trafficking protein DotA- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
K [auth KP1],
L [auth LP1],
M [auth MP1],
N [auth NP1],
O [auth OP1]		IcmE (DotG)- -
F [auth FP1],
G [auth GP1],
H [auth HP1],
I [auth IP1],
J [auth JP1]		DotA- - -
A [auth AP1],
B [auth BP1],
C [auth CP1],
D [auth DP1],
E [auth EP1]		IcmX (IcmY)- - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
K [auth KP1],
L [auth LP1],
M [auth MP1],
N [auth NP1],
O [auth OP1]		IPR053285Thylakoid lumenal pentapeptide repeat proteinFamily
K [auth KP1],
L [auth LP1],
M [auth MP1],
N [auth NP1],
O [auth OP1]		IPR042217Type IV secretion system, VirB10/TrbIHomologous Superfamily
K [auth KP1],
L [auth LP1],
M [auth MP1],
N [auth NP1],
O [auth OP1]		IPR057481Decapeptide repeatRepeat
K [auth KP1],
L [auth LP1],
M [auth MP1],
N [auth NP1],
O [auth OP1]		IPR049855DotG/IcmE-like, C-terminal domainDomain
K [auth KP1],
L [auth LP1],
M [auth MP1],
N [auth NP1],
O [auth OP1]		IPR005498Type IV secretion system, VirB10/TraB/TrbIFamily
F [auth FP1],
G [auth GP1],
H [auth HP1],
I [auth IP1],
J [auth JP1]		IPR021528Phagosome trafficking protein DotAFamily
F [auth FP1],
G [auth GP1],
H [auth HP1],
I [auth IP1],
J [auth JP1]		IPR027628Conjugal transfer/type IV secretion protein DotA/TraYFamily