9NGV | pdb_00009ngv

In situ cryo-EM structure of periplasmic ring (PR) of the Legionella Dot/Icm T4SS machine.

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZC [auth Dz]	RVP	e9ngvDz1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
XB [auth Cx]	RVP	e9ngvCx1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
VA [auth Bv]	RVP	e9ngvBv1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
UD [auth Eu]	RVP	e9ngvEu1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
T [auth At]	RVP	e9ngvAt1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
SC [auth Ds]	RVP	e9ngvDs1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
QB [auth Cq]	RVP	e9ngvCq1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
OA [auth Bo]	RVP	e9ngvBo1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
ND [auth En]	RVP	e9ngvEn1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
M [auth Am]	RVP	e9ngvAm1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
LC [auth Dl]	RVP	e9ngvDl1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
JB [auth Cj]	RVP	e9ngvCj1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
HA [auth Bh]	RVP	e9ngvBh1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
GD [auth Eg]	RVP	e9ngvEg1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
F [auth Af]	RVP	e9ngvAf1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
EC [auth De]	RVP	e9ngvDe1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
CB [auth Cc]	RVP	e9ngvCc1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
AA [auth Ba]	RVP	e9ngvBa1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AD [auth Ea], BA [auth Bb], DB [auth Cd], FC [auth Df], G [auth Ag], AD [auth Ea], BA [auth Bb], DB [auth Cd], FC [auth Df], G [auth Ag], HD [auth Eh], IA [auth Bi], KB [auth Ck], MC [auth Dm], N [auth An], OD [auth Eo], PA [auth Bp], RB [auth Cr], TC [auth Dt], U [auth Au], VD [auth Ev], WA [auth Bw], YB [auth Cy]	IcmK (DotH)	-	-	-
AA [auth Ba], CB [auth Cc], EC [auth De], F [auth Af], GD [auth Eg], AA [auth Ba], CB [auth Cc], EC [auth De], F [auth Af], GD [auth Eg], HA [auth Bh], JB [auth Cj], LC [auth Dl], M [auth Am], ND [auth En], OA [auth Bo], QB [auth Cq], SC [auth Ds], T [auth At], UD [auth Eu], VA [auth Bv], XB [auth Cx], ZC [auth Dz]	IcmE (DotG)	-	-	cellular anatomical structure membrane
BB [auth Cb], DC [auth Dd], E [auth Ae], FD [auth Ef], GA [auth Bg], BB [auth Cb], DC [auth Dd], E [auth Ae], FD [auth Ef], GA [auth Bg], IB [auth Ci], KC [auth Dk], L [auth Al], MD [auth Em], NA [auth Bn], PB [auth Cp], RC [auth Dr], S [auth As], TD [auth Et], UA [auth Bu], WB [auth Cw], YC [auth Dy], Z [auth Az]	IcmG (DotF)	-	-	-
AB [auth Ca], CC [auth Dc], D [auth Ad], ED [auth Ee], FA [auth Bf], AB [auth Ca], CC [auth Dc], D [auth Ad], ED [auth Ee], FA [auth Bf], HB [auth Ch], JC [auth Dj], K [auth Ak], LD [auth El], MA [auth Bm], OB [auth Co], QC [auth Dq], R [auth Ar], SD [auth Es], TA [auth Bt], VB [auth Cv], XC [auth Dx], Y [auth Ay]	unknown peptide D	-	-	-
BC [auth Db], C [auth Ac], DD [auth Ed], EA [auth Be], GB [auth Cg], BC [auth Db], C [auth Ac], DD [auth Ed], EA [auth Be], GB [auth Cg], IC [auth Di], J [auth Aj], KD [auth Ek], LA [auth Bl], NB [auth Cn], PC [auth Dp], Q [auth Aq], RD [auth Er], SA [auth Bs], UB [auth Cu], WC [auth Dw], X [auth Ax], ZA [auth Bz]	unknown peptide C	-	-	-
AC [auth Da], B [auth Ab], CD [auth Ec], DA [auth Bd], FB [auth Cf], AC [auth Da], B [auth Ab], CD [auth Ec], DA [auth Bd], FB [auth Cf], HC [auth Dh], I [auth Ai], JD [auth Ej], KA [auth Bk], MB [auth Cm], OC [auth Do], P [auth Ap], QD [auth Eq], RA [auth Br], TB [auth Ct], VC [auth Dv], W [auth Aw], YA [auth By]	unknown peptide B	-	-	-
A [auth Aa], BD [auth Eb], CA [auth Bc], EB [auth Ce], GC [auth Dg], A [auth Aa], BD [auth Eb], CA [auth Bc], EB [auth Ce], GC [auth Dg], H [auth Ah], ID [auth Ei], JA [auth Bj], LB [auth Cl], NC [auth Dn], O [auth Ao], PD [auth Ep], QA [auth Bq], SB [auth Cs], UC [auth Du], V [auth Av], XA [auth Bx], ZB [auth Cz]	unknown peptide A	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AD [auth Ea], BA [auth Bb], DB [auth Cd], FC [auth Df], G [auth Ag], AD [auth Ea], BA [auth Bb], DB [auth Cd], FC [auth Df], G [auth Ag], HD [auth Eh], IA [auth Bi], KB [auth Ck], MC [auth Dm], N [auth An], OD [auth Eo], PA [auth Bp], RB [auth Cr], TC [auth Dt], U [auth Au], VD [auth Ev], WA [auth Bw], YB [auth Cy]	IPR022073	Putative outer membrane core complex of type IVb secretion	Family
AA [auth Ba], CB [auth Cc], EC [auth De], F [auth Af], GD [auth Eg], AA [auth Ba], CB [auth Cc], EC [auth De], F [auth Af], GD [auth Eg], HA [auth Bh], JB [auth Cj], LC [auth Dl], M [auth Am], ND [auth En], OA [auth Bo], QB [auth Cq], SC [auth Ds], T [auth At], UD [auth Eu], VA [auth Bv], XB [auth Cx], ZC [auth Dz]	IPR053285	Thylakoid lumenal pentapeptide repeat protein	Family
AA [auth Ba], CB [auth Cc], EC [auth De], F [auth Af], GD [auth Eg], AA [auth Ba], CB [auth Cc], EC [auth De], F [auth Af], GD [auth Eg], HA [auth Bh], JB [auth Cj], LC [auth Dl], M [auth Am], ND [auth En], OA [auth Bo], QB [auth Cq], SC [auth Ds], T [auth At], UD [auth Eu], VA [auth Bv], XB [auth Cx], ZC [auth Dz]	IPR042217	Type IV secretion system, VirB10/TrbI	Homologous Superfamily
AA [auth Ba], CB [auth Cc], EC [auth De], F [auth Af], GD [auth Eg], AA [auth Ba], CB [auth Cc], EC [auth De], F [auth Af], GD [auth Eg], HA [auth Bh], JB [auth Cj], LC [auth Dl], M [auth Am], ND [auth En], OA [auth Bo], QB [auth Cq], SC [auth Ds], T [auth At], UD [auth Eu], VA [auth Bv], XB [auth Cx], ZC [auth Dz]	IPR057481	Decapeptide repeat	Repeat
AA [auth Ba], CB [auth Cc], EC [auth De], F [auth Af], GD [auth Eg], AA [auth Ba], CB [auth Cc], EC [auth De], F [auth Af], GD [auth Eg], HA [auth Bh], JB [auth Cj], LC [auth Dl], M [auth Am], ND [auth En], OA [auth Bo], QB [auth Cq], SC [auth Ds], T [auth At], UD [auth Eu], VA [auth Bv], XB [auth Cx], ZC [auth Dz]	IPR049855	DotG/IcmE-like, C-terminal domain	Domain
AA [auth Ba], CB [auth Cc], EC [auth De], F [auth Af], GD [auth Eg], AA [auth Ba], CB [auth Cc], EC [auth De], F [auth Af], GD [auth Eg], HA [auth Bh], JB [auth Cj], LC [auth Dl], M [auth Am], ND [auth En], OA [auth Bo], QB [auth Cq], SC [auth Ds], T [auth At], UD [auth Eu], VA [auth Bv], XB [auth Cx], ZC [auth Dz]	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.