CryoEM Structure of De Novo Antibody Fragment scFv 6 with C. difficile Toxin B (TcdB)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B [auth C] | LSDAT_euk | e9nfuC1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: LSDAT_euk | ECOD (v295.2) |
| A | LSDAT_euk | e9nfuA1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: LSDAT_euk | ECOD (v295.2) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR038383 | CGT/MARTX, cysteine protease (CPD) domain superfamily | Homologous Superfamily | |
| IPR024772 | TcdA/TcdB toxin, N-terminal helical domain | Domain | |
| IPR020974 | CGT/MARTX, cysteine protease (CPD) domain | Domain | |
| IPR024769 | TcdA/TcdB toxin, pore forming domain | Domain | |
| IPR029044 | Nucleotide-diphospho-sugar transferases | Homologous Superfamily | |
| IPR061976 | TcsH, C-terminal DRBD | Domain | |
| IPR024770 | TcdA/TcdB toxin, catalytic glycosyltransferase domain | Domain | |
| IPR018337 | Cell wall/choline-binding repeat | Repeat |