Annotations: 9KZG

Cryo-EM structure of the LH1 complex from Roseiflexus castenholzii

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
CA [auth o]	Beta-Casp	e9kzgo1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
DA [auth a]	Beta-Casp	e9kzga1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
Q [auth c]	Beta-Casp	e9kzgc1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
R [auth d]	Beta-Casp	e9kzgd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
S [auth e]	Beta-Casp	e9kzge1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
T [auth f]	Beta-Casp	e9kzgf1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
U [auth g]	Beta-Casp	e9kzgg1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
V [auth h]	Beta-Casp	e9kzgh1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
X [auth j]	Beta-Casp	e9kzgj1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
Y [auth k]	Beta-Casp	e9kzgk1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
Z [auth l]	Beta-Casp	e9kzgl1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
W [auth i]	Beta-Casp	e9kzgi1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
BA [auth n]	Beta-Casp	e9kzgn1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
AA [auth m]	Beta-Casp	e9kzgm1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
C [auth B]	Beta-Casp	e9kzgB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
D [auth C]	Beta-Casp	e9kzgC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
E [auth D]	Beta-Casp	e9kzgD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
F [auth E]	Beta-Casp	e9kzgE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
G [auth F]	Beta-Casp	e9kzgF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
H [auth G]	Beta-Casp	e9kzgG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
I [auth H]	Beta-Casp	e9kzgH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
J [auth I]	Beta-Casp	e9kzgI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
K [auth J]	Beta-Casp	e9kzgJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
L [auth K]	Beta-Casp	e9kzgK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
M [auth L]	Beta-Casp	e9kzgL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
N [auth M]	Beta-Casp	e9kzgM1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
P [auth O]	Beta-Casp	e9kzgO1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
O [auth N]	Beta-Casp	e9kzgN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth b], AA [auth m], BA [auth n], CA [auth o], DA [auth a], A [auth b], AA [auth m], BA [auth n], CA [auth o], DA [auth a], Q [auth c], R [auth d], S [auth e], T [auth f], U [auth g], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	Beta subunit of light-harvesting 1	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth O]	Alpha subunit of light-harvesting 1	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle cytoplasm vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth b], AA [auth m], BA [auth n], CA [auth o], DA [auth a], A [auth b], AA [auth m], BA [auth n], CA [auth o], DA [auth a], Q [auth c], R [auth d], S [auth e], T [auth f], U [auth g], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	IPR000066	Antenna complex, alpha/beta subunit	Domain
A [auth b], AA [auth m], BA [auth n], CA [auth o], DA [auth a], A [auth b], AA [auth m], BA [auth n], CA [auth o], DA [auth a], Q [auth c], R [auth d], S [auth e], T [auth f], U [auth g], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
A [auth b], AA [auth m], BA [auth n], CA [auth o], DA [auth a], A [auth b], AA [auth m], BA [auth n], CA [auth o], DA [auth a], Q [auth c], R [auth d], S [auth e], T [auth f], U [auth g], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	IPR035889	Light-harvesting complex	Homologous Superfamily
A [auth b], AA [auth m], BA [auth n], CA [auth o], DA [auth a], A [auth b], AA [auth m], BA [auth n], CA [auth o], DA [auth a], Q [auth c], R [auth d], S [auth e], T [auth f], U [auth g], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	IPR002362	Light-harvesting protein B beta chain	Family
B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth O]	IPR002361	Antenna complex, alpha subunit conserved site	Conserved Site
B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth O]	IPR035889	Light-harvesting complex	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9KZG | pdb_00009kzg

Cryo-EM structure of the LH1 complex from Roseiflexus castenholzii

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage