9IGU | pdb_00009igu

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and RBFA (Inward conformation) (State M2)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth K]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052599 3000068 SCOP2B (2022-06-29)
H [auth J]SCOP2B SuperfamilyNucleic acid-binding proteins 8095431 3000135 SCOP2B (2022-06-29)
G [auth I]SCOP2B SuperfamilyTranslational machinery components 8098948 3000571 SCOP2B (2022-06-29)
FA [auth a]SCOP2B SuperfamilyRbfA-like 8033876 3000809 SCOP2B (2022-06-29)
Y [auth 0]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8091481 3000334 SCOP2B (2022-06-29)
W [auth Y]SCOP2B SuperfamilyMitochondrial 28S ribosomal protein S31-like 8090914 3002471 SCOP2B (2022-06-29)
P [auth R]SCOP2B SuperfamilyMitochondrial 28S ribosomal protein S22-like 8051932 3002074 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063850 3001397 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth K]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
H [auth J]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
G [auth I]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
F [auth G]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
E [auth F]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
D [auth E]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
EA [auth H]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
C [auth D]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
C [auth D]PF21251Small ribosomal subunit protein uS5m, N-terminal (Ribosomal_uS5m_N)Small ribosomal subunit protein uS5m, N-terminalThis entry represents an extension found at the N-terminal of the mitochondrial 28S Small ribosomal subunit protein uS5m [1,2]. This region lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the m ...This entry represents an extension found at the N-terminal of the mitochondrial 28S Small ribosomal subunit protein uS5m [1,2]. This region lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the mRNA channel entrance [2].
Domain
C [auth D]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
BA [auth 4]PF13812Pentatricopeptide repeat domain (PPR_3)Pentatricopeptide repeat domain- Repeat
BA [auth 4]PF22330Small ribosomal subunit protein mS39, PPR (Rib_mS39_PPR)Small ribosomal subunit protein mS39, PPR- Repeat
Z [auth 1]PF10213Mitochondrial ribosomal subunit protein (MRP-S28)Mitochondrial ribosomal subunit protein- Family
Y [auth 0]PF16053Mitochondrial 28S ribosomal protein S34 (MRP-S34)Mitochondrial 28S ribosomal protein S34- Family
X [auth Z]PF08293Mitochondrial ribosomal subunit S27 (MRP-S33)Mitochondrial ribosomal subunit S27- Family
V [auth X]PF10236Mitochondrial ribosomal death-associated protein 3 (DAP3)Mitochondrial ribosomal death-associated protein 3- Family
B [auth C]PF14955Mitochondrial ribosome subunit S24 (MRP-S24)Mitochondrial ribosome subunit S24- Family
S [auth U]PF14943Mitochondrial ribosome subunit S26 (MRP-S26)Mitochondrial ribosome subunit S26- Family
R [auth T]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
Q [auth S]PF10484Mitochondrial ribosomal protein S23 (MRP-S23)Mitochondrial ribosomal protein S23- Family
P [auth R]PF10245Mitochondrial 28S ribosomal protein S22 (MRP-S22)Mitochondrial 28S ribosomal protein S22- Family
O [auth Q]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
N [auth P]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
M [auth O]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
L [auth N]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
K [auth M]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
J [auth L]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
A [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth K]28S ribosomal protein S14, mitochondrial
H [auth J]28S ribosomal protein S12, mitochondrial
G [auth I]28S ribosomal protein S11, mitochondrial
F [auth G]28S ribosomal protein S9, mitochondrial
E [auth F]28S ribosomal protein S7, mitochondrial
D [auth E]28S ribosomal protein S6, mitochondrial
FA [auth a]Putative ribosome-binding factor A, mitochondrial
EA [auth H]28S ribosomal protein S10, mitochondrial-
DA [auth A]12S mitochondrial rRNA---
C [auth D]28S ribosomal protein S5, mitochondrial
CA [auth b]12S rRNA N4-methylcytidine (m4C) methyltransferase
BA [auth 4]Pentatricopeptide repeat domain-containing protein 3, mitochondrial
AA [auth 3]Aurora kinase A-interacting protein-
Z [auth 1]28S ribosomal protein S35, mitochondrial
Y [auth 0]28S ribosomal protein S34, mitochondrial
X [auth Z]28S ribosomal protein S33, mitochondrial
W [auth Y]28S ribosomal protein S31, mitochondrial
V [auth X]28S ribosomal protein S29, mitochondrial
U [auth W]28S ribosomal protein S28, mitochondrial
T [auth V]28S ribosomal protein S27, mitochondrial
B [auth C]28S ribosomal protein S24, mitochondrial
S [auth U]28S ribosomal protein S26, mitochondrial
R [auth T]28S ribosomal protein S25, mitochondrial
Q [auth S]28S ribosomal protein S23, mitochondrial
P [auth R]28S ribosomal protein S22, mitochondrial
O [auth Q]MRPS21 isoform 1
N [auth P]28S ribosomal protein S18c, mitochondrial
M [auth O]28S ribosomal protein S18b, mitochondrial
L [auth N]28S ribosomal protein S17, mitochondrial
K [auth M]28S ribosomal protein S16, mitochondrial
J [auth L]28S ribosomal protein S15, mitochondrial
A [auth B]28S ribosomal protein S2, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth K]IPR001209Small ribosomal subunit protein uS14Family
H [auth J]IPR006032Small ribosomal subunit protein uS12Family
H [auth J]IPR005679Ribosomal protein uS12, bacteriaFamily
H [auth J]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
G [auth I]IPR001971Small ribosomal subunit protein uS11Family
G [auth I]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
G [auth I]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
F [auth G]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
F [auth G]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
F [auth G]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
F [auth G]IPR000754Small ribosomal subunit protein uS9Family
F [auth G]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
E [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
E [auth F]IPR000235Small ribosomal subunit protein uS7Family
E [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain
D [auth E]IPR000529Small ribosomal subunit protein bS6Family
D [auth E]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
D [auth E]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
FA [auth a]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
FA [auth a]IPR039212Ribosome-binding factor A, mitochondrialFamily
FA [auth a]IPR020053Ribosome-binding factor A, conserved siteConserved Site
FA [auth a]IPR023799Ribosome-binding factor A domain superfamilyHomologous Superfamily
FA [auth a]IPR000238Ribosome-binding factor AFamily
EA [auth H]IPR027486Small ribosomal subunit protein uS10 domainDomain
EA [auth H]IPR040055Small ribosomal subunit protein uS10mFamily
EA [auth H]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
C [auth D]IPR000851Small ribosomal subunit protein uS5Family
C [auth D]IPR048584Small ribosomal subunit protein uS5m, N-terminal domainDomain
C [auth D]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
C [auth D]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
C [auth D]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
C [auth D]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
C [auth D]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
CA [auth b]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
CA [auth b]IPR002903Ribosomal RNA small subunit methyltransferase HFamily
CA [auth b]IPR023397S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamilyHomologous Superfamily
BA [auth 4]IPR037387Pentatricopeptide repeat domain-containing protein 3Family
BA [auth 4]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
BA [auth 4]IPR002885Pentatricopeptide repeatRepeat
BA [auth 4]IPR055063Small ribosomal subunit protein mS39, PPRRepeat
AA [auth 3]IPR013177Ribosomal protein bS22, C-terminalDomain
Z [auth 1]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
Z [auth 1]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
Y [auth 0]IPR032053Small ribosomal subunit protein mS34Family
X [auth Z]IPR013219Small ribosomal subunit protein mS33Family
W [auth Y]IPR026299Mitochondrial 28S ribosomal protein S31Family
V [auth X]IPR019368Small ribosomal subunit protein mS29Family
V [auth X]IPR008092Small ribosomal subunit protein mS29, metazoaFamily
V [auth X]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
U [auth W]IPR019375Small ribosomal subunit protein bS1mFamily
T [auth V]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
T [auth V]IPR002885Pentatricopeptide repeatRepeat
T [auth V]IPR019266Small ribosomal subunit protein mS27Family
T [auth V]IPR034913mS27/PTCD2Family
B [auth C]IPR026146Small ribosomal subunit protein uS3m, metazoanFamily
S [auth U]IPR026140Small ribosomal subunit protein mS26Family
R [auth T]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
R [auth T]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
R [auth T]IPR040049Ribosomal subunit protein mS25/mL61, mitochondrialFamily
Q [auth S]IPR059242Small ribosomal subunit protein mS23, conserved domainDomain
Q [auth S]IPR019520Small ribosomal subunit protein mS23, metazoaFamily
Q [auth S]IPR023611Small ribosomal subunit protein mS23, conserved domain, metazoaDomain
P [auth R]IPR019374Small ribosomal subunit protein mS22Family
O [auth Q]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
O [auth Q]IPR001911Small ribosomal subunit protein bS21Family
N [auth P]IPR001648Small ribosomal subunit protein bS18Family
N [auth P]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
N [auth P]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
M [auth O]IPR040054Small ribosomal subunit protein mS40Family
M [auth O]IPR001648Small ribosomal subunit protein bS18Family
M [auth O]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
L [auth N]IPR039193Small ribosomal subunit protein uS17m, metazoaFamily
L [auth N]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth N]IPR000266Small ribosomal subunit protein uS17Family
K [auth M]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
K [auth M]IPR000307Small ribosomal subunit protein bS16Family
J [auth L]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
J [auth L]IPR000589Small ribosomal subunit protein uS15Family
J [auth L]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
J [auth L]IPR052137Universal small ribosomal subunit uS15Family
A [auth B]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
A [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
A [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
A [auth B]IPR001865Small ribosomal subunit protein uS2Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I [auth K]O60783
H [auth J]O15235
G [auth I]P82912
F [auth G]P82933
E [auth F]Q9Y2R9
D [auth E]P82932
FA [auth a]Q8N0V3
EA [auth H]P82664
C [auth D]P82675
CA [auth b]A6NJ78
BA [auth 4]Q96EY7
AA [auth 3]Q9NWT8
Z [auth 1]P82673
Y [auth 0]P82930
X [auth Z]Q9Y291
W [auth Y]Q92665
V [auth X]P51398
U [auth W]Q9Y2Q9
T [auth V]Q92552
R [auth T]P82663
Q [auth S]Q9Y3D9
P [auth R]P82650
N [auth P]Q9Y3D5
M [auth O]Q9Y676
L [auth N]Q9Y2R5
K [auth M]Q9Y3D3
J [auth L]P82914
A [auth B]Q9Y399

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
G [auth I]5F0
DA [auth A]5MC Parent Component: C

DA [auth A]5MU Parent Component: U

DA [auth A]B8T Parent Component: C

DA [auth A]MA6 Parent Component: A

O [auth Q]ACE AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

:  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359