Annotations: 9HVM

In-cell Structure of Pyrenoid Rubisco

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	RuBisCO, small subunit	8035897	3001622	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	RuBisCO, small subunit	8035897	3001622	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	RuBisCO, small subunit	8035897	3001622	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	RuBisCO, small subunit	8035897	3001622	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	RuBisCO, small subunit	8035897	3001622	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RuBisCO, small subunit	8035897	3001622	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RuBisCO, small subunit	8035897	3001622	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RuBisCO, small subunit	8035897	3001622	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	RuBisCo, C-terminal domain	8035888	3000552	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035891	3001258	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035891	3001258	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	RuBisCo, C-terminal domain	8035888	3000552	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035891	3001258	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	RuBisCo, C-terminal domain	8035888	3000552	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035891	3001258	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	RuBisCo, C-terminal domain	8035888	3000552	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035891	3001258	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	RuBisCo, C-terminal domain	8035888	3000552	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035891	3001258	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RuBisCo, C-terminal domain	8035888	3000552	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035891	3001258	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RuBisCo, C-terminal domain	8035888	3000552	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035891	3001258	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RuBisCo, C-terminal domain	8035888	3000552	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	Beta-Casp	e9hvmP1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
N	Beta-Casp	e9hvmN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
L	Beta-Casp	e9hvmL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
J	Beta-Casp	e9hvmJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
H	Beta-Casp	e9hvmH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
F	Beta-Casp	e9hvmF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
D	Beta-Casp	e9hvmD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
B	Stathmin	e9hvmB01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Stathmin	ECOD (v294.2)
O	Beta-Casp	e9hvmO1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
M	Beta-Casp	e9hvmM1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
K	Beta-Casp	e9hvmK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
I	Beta-Casp	e9hvmI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
G	Beta-Casp	e9hvmG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
E	Beta-Casp	e9hvmE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
C	Beta-Casp	e9hvmC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
A	Stathmin	e9hvmA01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Stathmin	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H, J B, D, F, H, J, L, N, P	PF00101	Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)	Ribulose bisphosphate carboxylase, small chain		Domain
A, C, E, G, I A, C, E, G, I, K, M, O	PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)	Ribulose bisphosphate carboxylase large chain, N-terminal domain	The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.	Domain
A, C, E, G, I A, C, E, G, I, K, M, O	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)	Ribulose bisphosphate carboxylase large chain, catalytic domain	The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L, N, P	Ribulose bisphosphate carboxylase small subunit, chloroplastic 1	ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	metabolic compound salvage biosynthetic process metabolic process cellular process photorespiration carbohydrate metabolic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process carbon fixation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
A, C, E, G, I A, C, E, G, I, K, M, O	Ribulose bisphosphate carboxylase large chain	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity monooxygenase activity oxidoreductase activity	metabolic compound salvage biosynthetic process metabolic process cellular process photorespiration carbohydrate metabolic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process carbon fixation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L, N, P	IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P	IPR024681	Ribulose bisphosphate carboxylase, small subunit	Family
B, D, F, H, J B, D, F, H, J, L, N, P	IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O	IPR020888	Ribulose bisphosphate carboxylase large subunit, type I	Family
A, C, E, G, I A, C, E, G, I, K, M, O	IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O	IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	Active Site
A, C, E, G, I A, C, E, G, I, K, M, O	IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	Domain
A, C, E, G, I A, C, E, G, I, K, M, O	IPR033966	RuBisCO	Family
A, C, E, G, I A, C, E, G, I, K, M, O	IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	Domain
A, C, E, G, I A, C, E, G, I, K, M, O	IPR036422	RuBisCO large subunit, N-terminal domain superfamily	Homologous Superfamily