Annotations: 9HAQ

Crystal structure of methionine gamma-lyase from Brevibacterium sandarakinum in complex with PLP and norleucine at pH 8.5

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
O	PAD_N	e9haqO1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAD_N	ECOD (v295.2)
N	PAD_N	e9haqN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAD_N	ECOD (v295.2)
M	PAD_N	e9haqM1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAD_N	ECOD (v295.2)
K	PAD_N	e9haqK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAD_N	ECOD (v295.2)
G	PAD_N	e9haqG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAD_N	ECOD (v295.2)
E	PC_rep, HEAT_2, RPN2_C	e9haqE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PC_rep, HEAT_2, RPN2_C	ECOD (v295.2)
C	PAD_N	e9haqC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAD_N	ECOD (v295.2)
P	PAD_N	e9haqP1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAD_N	ECOD (v295.2)
L	PAD_N	e9haqL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAD_N	ECOD (v295.2)
J	PAD_N	e9haqJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAD_N	ECOD (v295.2)
I	PAD_N	e9haqI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAD_N	ECOD (v295.2)
H	PAD_N	e9haqH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAD_N	ECOD (v295.2)
F	PAD_N	e9haqF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAD_N	ECOD (v295.2)
D	PAD_N	e9haqD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAD_N	ECOD (v295.2)
B	PAD_N	e9haqB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAD_N	ECOD (v295.2)
A	PAD_N	e9haqA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PAD_N	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, E, G, K, M C, E, G, K, M, N, O	Cystathionine gamma-synthase	carbon-sulfur lyase activity lyase activity catalytic activity cystathionine gamma-lyase activity methionine gamma-lyase activity homocysteine desulfhydrase activity vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding binding anion binding heterocyclic compound binding small molecule binding	homocysteine metabolic process oxoacid metabolic process sulfur amino acid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process transsulfuration non-proteinogenic amino acid metabolic process proteinogenic amino acid metabolic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
A, B, D, F, H A, B, D, F, H, I, J, L, P	Cystathionine gamma-synthase	carbon-sulfur lyase activity lyase activity catalytic activity cystathionine gamma-lyase activity methionine gamma-lyase activity homocysteine desulfhydrase activity vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding binding anion binding heterocyclic compound binding small molecule binding	homocysteine metabolic process oxoacid metabolic process sulfur amino acid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process transsulfuration non-proteinogenic amino acid metabolic process proteinogenic amino acid metabolic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, E, G, K, M C, E, G, K, M, N, O	IPR015424	Pyridoxal phosphate-dependent transferase	Homologous Superfamily
C, E, G, K, M C, E, G, K, M, N, O	IPR000277	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme	Family
C, E, G, K, M C, E, G, K, M, N, O	IPR015421	Pyridoxal phosphate-dependent transferase, major domain	Homologous Superfamily
C, E, G, K, M C, E, G, K, M, N, O	IPR015422	Pyridoxal phosphate-dependent transferase, small domain	Homologous Superfamily
A, B, D, F, H A, B, D, F, H, I, J, L, P	IPR015424	Pyridoxal phosphate-dependent transferase	Homologous Superfamily
A, B, D, F, H A, B, D, F, H, I, J, L, P	IPR000277	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme	Family
A, B, D, F, H A, B, D, F, H, I, J, L, P	IPR015421	Pyridoxal phosphate-dependent transferase, major domain	Homologous Superfamily
A, B, D, F, H A, B, D, F, H, I, J, L, P	IPR015422	Pyridoxal phosphate-dependent transferase, small domain	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, D, F, H A, B, D, F, H, I, J, L, P	LLP	Parent Component: LYS : AA0119 : N6-pyridoxal phosphate-L-lysine MOD:00128

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.