Crystal structure of Thrombin in complex with a Chlorothiophene-based inhibitor, CP2, discovered by a novel rapid nanoscale library screening.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HSCOP2B SuperfamilyTrypsin-like serine proteases 8042154 3000114 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyTrypsin-like serine proteases 8042154 3000114 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyTrypsin-like serine proteases 8042154 3000114 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyTrypsin-like serine proteases 8042154 3000114 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HPAD_Ne9h79H1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
FPAD_Ne9h79F1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
DPAD_Ne9h79D1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
BPAD_Ne9h79B1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
GPAD_Ne9h79G1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
EPAD_Ne9h79E1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
CPAD_Ne9h79C1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
APAD_Ne9h79A1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, D, F, H
PF00089Trypsin (Trypsin)TrypsinDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, D, F, H
Prothrombin
A, C, E, G
Thrombin light chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B, D, F, H
IPR018992Thrombin light chainDomain
B, D, F, H
IPR037111Thrombin light chain domain superfamilyHomologous Superfamily
B, D, F, H
IPR003966Prothrombin/thrombinFamily
B, D, F, H
IPR009003Peptidase S1, PA clanHomologous Superfamily
B, D, F, H
IPR033116Serine proteases, trypsin family, serine active siteActive Site
B, D, F, H
IPR001254Serine proteases, trypsin domainDomain
B, D, F, H
IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
B, D, F, H
IPR000001KringleDomain
B, D, F, H
IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
B, D, F, H
IPR051659Serine Protease S1 Domain-Containing ProteinFamily
B, D, F, H
IPR018056Kringle, conserved siteConserved Site
B, D, F, H
IPR018114Serine protease-like, trypsin family, histidine active siteActive Site
B, D, F, H
IPR013806Kringle-like foldHomologous Superfamily
B, D, F, H
IPR038178Kringle superfamilyHomologous Superfamily
B, D, F, H
IPR001314Peptidase S1A, chymotrypsin familyFamily
A, C, E, G
IPR018992Thrombin light chainDomain
A, C, E, G
IPR037111Thrombin light chain domain superfamilyHomologous Superfamily
A, C, E, G
IPR003966Prothrombin/thrombinFamily
A, C, E, G
IPR009003Peptidase S1, PA clanHomologous Superfamily
A, C, E, G
IPR033116Serine proteases, trypsin family, serine active siteActive Site
A, C, E, G
IPR001254Serine proteases, trypsin domainDomain
A, C, E, G
IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
A, C, E, G
IPR000001KringleDomain
A, C, E, G
IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
A, C, E, G
IPR051659Serine Protease S1 Domain-Containing ProteinFamily
A, C, E, G
IPR018056Kringle, conserved siteConserved Site
A, C, E, G
IPR018114Serine protease-like, trypsin family, histidine active siteActive Site
A, C, E, G
IPR013806Kringle-like foldHomologous Superfamily
A, C, E, G
IPR038178Kringle superfamilyHomologous Superfamily
A, C, E, G
IPR001314Peptidase S1A, chymotrypsin familyFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B, D, F, H
P00734
A, C, E, G
P00734