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 9H22 | pdb_00009h22

Cryo EM structure of RC-dLH complex model II from Gemmatimonas groenlandica


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
YB [auth Al]PAD_Ne9h22Al1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
WB [auth Ak]PAD_Ne9h22Ak1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
UB [auth Aj]PAD_Ne9h22Aj1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
SB [auth Ai]PAD_Ne9h22Ai1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
QB [auth Ah]PAD_Ne9h22Ah1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
OB [auth Ag]PAD_Ne9h22Ag1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
MB [auth Af]PAD_Ne9h22Af1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
KB [auth Ae]PAD_Ne9h22Ae1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
IB [auth Ad]PAD_Ne9h22Ad1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
GC [auth Ap]PAD_Ne9h22Ap1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
GB [auth Ac]PAD_Ne9h22Ac1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
EC [auth Ao]PAD_Ne9h22Ao1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
EB [auth Ab]PAD_Ne9h22Ab1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
CC [auth An]PAD_Ne9h22An1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
CB [auth Aa]PAD_Ne9h22Aa1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
AC [auth Am]PAD_Ne9h22Am1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
BC [auth Bm]PAD_Ne9h22Bm1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
PB [auth Bg]PAD_Ne9h22Bg1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
Z [auth BJ]PAD_Ne9h22BJ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
ZB [auth Bl]PAD_Ne9h22Bl1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
ZA [auth BW]PAD_Ne9h22BW1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
XB [auth Bk]PAD_Ne9h22Bk1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
XA [auth BV]PAD_Ne9h22BV1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
X [auth BI]PAD_Ne9h22BI1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
VB [auth Bj]PAD_Ne9h22Bj1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
V [auth BH]PAD_Ne9h22BH1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
UA [auth BU]PAD_Ne9h22BU1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
TB [auth Bi]PAD_Ne9h22Bi1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
T [auth BG]PAD_Ne9h22BG1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
SA [auth BT]PAD_Ne9h22BT1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
RB [auth Bh]PAD_Ne9h22Bh1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
QA [auth BS]PAD_Ne9h22BS1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
Q [auth BF]PAD_Ne9h22BF1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
P [auth BE]PAD_Ne9h22BE1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
OA [auth BR]PAD_Ne9h22BR1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
NB [auth Bf]PAD_Ne9h22Bf1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
NA [auth BQ]PAD_Ne9h22BQ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
M [auth BD]PAD_Ne9h22BD1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
LB [auth Be]PAD_Ne9h22Be1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
L [auth BC]PAD_Ne9h22BC1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
KA [auth BP]PAD_Ne9h22BP1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
JB [auth Bd]PAD_Ne9h22Bd1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
JA [auth BO]PAD_Ne9h22BO1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
I [auth BB]PAD_Ne9h22BB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
HC [auth Bp]PAD_Ne9h22Bp1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
HB [auth Bc]PAD_Ne9h22Bc1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
H [auth BA]PAD_Ne9h22BA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
GA [auth BN]PAD_Ne9h22BN1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
FC [auth Bo]PAD_Ne9h22Bo1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
FB [auth Bb]PAD_Ne9h22Bb1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
FA [auth BM]PAD_Ne9h22BM1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
DC [auth Bn]PAD_Ne9h22Bn1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
DB [auth Ba]PAD_Ne9h22Ba1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
DA [auth BL]PAD_Ne9h22BL1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
BB [auth BX]PAD_Ne9h22BX1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
BA [auth BK]PAD_Ne9h22BK1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
WA [auth AV]PAD_Ne9h22AV1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
YA [auth AW]PAD_Ne9h22AW1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
Y [auth AJ]PAD_Ne9h22AJ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
W [auth AI]PAD_Ne9h22AI1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
VA [auth AU]PAD_Ne9h22AU1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
U [auth AH]PAD_Ne9h22AH1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
TA [auth AT]PAD_Ne9h22AT1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
S [auth AG]PAD_Ne9h22AG1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
RA [auth AS]PAD_Ne9h22AS1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
R [auth AF]PAD_Ne9h22AF1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
PA [auth AR]PAD_Ne9h22AR1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
O [auth AE]PAD_Ne9h22AE1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
N [auth AD]PAD_Ne9h22AD1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
MA [auth AQ]PAD_Ne9h22AQ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
LA [auth AP]PAD_Ne9h22AP1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
K [auth AC]PAD_Ne9h22AC1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
J [auth AB]PAD_Ne9h22AB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
IA [auth AO]PAD_Ne9h22AO1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
HA [auth AN]PAD_Ne9h22AN1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
G [auth AA]PAD_Ne9h22AA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
EA [auth AM]PAD_Ne9h22AM1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
CA [auth AL]PAD_Ne9h22AL1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
AB [auth AX]PAD_Ne9h22AX1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
AA [auth AK]PAD_Ne9h22AK1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
F [auth C]Cry1Ac_D5e9h22C1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Cry1Ac_D5ECOD (v295.2)
E [auth K]Cry1Ac_D5e9h22K1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Cry1Ac_D5ECOD (v295.2)
C [auth M]Cry1Ac_D5e9h22M1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Cry1Ac_D5ECOD (v295.2)
B [auth L]RVT_1e9h22L1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVT_1ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunitDomain
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunitDomain
F [auth C]PF02276Photosynthetic reaction centre cytochrome C subunit (CytoC_RC)Photosynthetic reaction centre cytochrome C subunit- Family
C [auth M]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
B [auth L]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Light-harvesting protein-
Light-harvesting protein-
Light-harvesting protein-
F [auth C]Photosynthetic reaction center cytochrome c subunit
E [auth K]reaction centre Hc sub unit- - -
D [auth H]reaction centre Ht su unit---
C [auth M]Reaction center protein M chain-
B [auth L]Reaction center protein L chain-
A [auth S]reaction centre S sub unit- - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR023623Antenna complex, beta subunit, conserved siteConserved Site
IPR002362Light-harvesting protein B beta chainFamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR035889Light-harvesting complexHomologous Superfamily
F [auth C]IPR036280Multiheme cytochrome superfamilyHomologous Superfamily
F [auth C]IPR023119Multihaem cytochrome, PRC subunit superfamilyHomologous Superfamily
F [auth C]IPR003158Photosynthetic reaction centre, cytochrome c subunitFamily
E [auth K]IPR014747Bacterial photosynthetic reaction centre, H-chain, C-terminalHomologous Superfamily
E [auth K]IPR015810Photosynthetic reaction centre, H subunit, N-terminalDomain
E [auth K]IPR005652Photosynthetic reaction centre, H subunitFamily
E [auth K]IPR037097Photosynthetic reaction centre, H subunit, N-terminal domain superfamilyHomologous Superfamily
E [auth K]IPR011033PRC-barrel-like superfamilyHomologous Superfamily
E [auth K]IPR027275PRC-barrel domainDomain
C [auth M]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
C [auth M]IPR005781Photosynthetic reaction centre, M subunitFamily
C [auth M]IPR000484Photosynthetic reaction centre, L/MFamily
C [auth M]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
B [auth L]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
B [auth L]IPR000484Photosynthetic reaction centre, L/MFamily
B [auth L]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
B [auth L]IPR005871Photosynthetic reaction centre, L subunitFamily