9GMO

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
PF01912eIF-6 family (eIF-6)eIF-6 family- Family
PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
PF00467KOW motif (KOW)KOW motif- Family
PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
PF00467KOW motif (KOW)KOW motif- Family
PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
28S rRNA---
5S rRNA---
5.8S rRNA---
60S ribosomal protein L8
60S ribosomal protein L3
60S ribosomal protein L4
60S ribosomal protein L5
Large ribosomal subunit protein eL6
60S ribosomal protein L13a
60S ribosomal protein L17
60S ribosomal protein L18
60S ribosomal protein L19
60S ribosomal protein L18a
60S ribosomal protein L21
60S ribosomal protein L22
60S ribosomal protein L23
60S ribosomal protein L24
60S ribosomal protein L23a
Large ribosomal subunit protein uL24
60S ribosomal protein L27
60S ribosomal protein L27a
60S ribosomal protein L29
60S ribosomal protein L30
60S ribosomal protein L31
60S ribosomal protein L32
60S ribosomal protein L35a
AA [auth a]60S ribosomal protein L34
BA [auth b]60S ribosomal protein L35
CA [auth c]60S ribosomal protein L36
DA [auth d]60S ribosomal protein L37
EA [auth e]60S ribosomal protein L38
FA [auth f]60S ribosomal protein L39
GA [auth g]Ubiquitin-60S ribosomal protein L40
HA [auth h]Eukaryotic translation initiation factor 6
IA [auth i]60S ribosomal protein L36a
JA [auth j]60S ribosomal protein L37a
KA [auth k]60S ribosomal protein L28
LA [auth l]60S ribosomal protein L15
MA [auth m]Large ribosomal subunit protein uL30
NA [auth n]60S ribosomal protein L7a
OA [auth o]60S ribosomal protein L9
PA [auth p]Large ribosomal subunit protein uL16
QA [auth q]60S ribosomal protein L11
RA [auth r]60S ribosomal protein L13
SA [auth s]60S ribosomal protein L14
TA [auth 0]Cytoplasmic 60S subunit biogenesis factor ZNF622

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
IPR002136Large ribosomal subunit protein uL4Family
IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR000915Large ribosomal subunit protein eL6Family
IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
IPR005822Large ribosomal subunit protein uL13Family
IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
IPR001063Large ribosomal subunit protein uL22Family
IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
IPR000039Large ribosomal subunit protein eL18Family
IPR021131Large ribosomal subunit protein uL15/eL18Domain
IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
IPR039547Large ribosomal subunit protein eL19Family
IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
IPR000196Large ribosomal subunit protein eL19 domainDomain
IPR028877Large ribosomal subunit protein eL20Family
IPR023573Large ribosomal subunit protein eL20 domainDomain
IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
IPR001147Large ribosomal subunit protein eL21Family
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
IPR002671Large ribosomal subunit protein eL22Family
IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
IPR000218Large ribosomal subunit protein uL14Family
IPR011017TRASH domainDomain
IPR000988Large ribosomal subunit protein eL24-relatedFamily
IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
IPR019985Large ribosomal subunit protein uL23Family
IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
IPR013025Large ribosomal subunit protein uL23-likeFamily
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR005824KOWDomain
IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
IPR001141Large ribosomal subunit protein eL27Family
IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
IPR005824KOWDomain
IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
IPR021131Large ribosomal subunit protein uL15/eL18Domain
IPR030878Large ribosomal subunit protein uL15Family
IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
IPR002673Large ribosomal subunit protein eL29Family
IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IPR000231Large ribosomal subunit protein eL30Family
IPR039109Large ribosomal subunit protein eL30-likeFamily
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
IPR000054Large ribosomal subunit protein eL31Family
IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
IPR001515Large ribosomal subunit protein eL32Family
IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR001780Large ribosomal subunit protein eL33Family
AA [auth a]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
AA [auth a]IPR008195Large ribosomal subunit protein eL34Family
BA [auth b]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
BA [auth b]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
BA [auth b]IPR001854Large ribosomal subunit protein uL29Family
BA [auth b]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
CA [auth c]IPR000509Large ribosomal subunit protein eL36Family
CA [auth c]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
DA [auth d]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
DA [auth d]IPR001569Large ribosomal subunit protein eL37Family
DA [auth d]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
DA [auth d]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EA [auth e]IPR002675Large ribosomal subunit protein eL38Family
EA [auth e]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
FA [auth f]IPR000077Large ribosomal subunit protein eL39Family
FA [auth f]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
FA [auth f]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
GA [auth g]IPR019954Ubiquitin conserved siteConserved Site
GA [auth g]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
GA [auth g]IPR050158Ubiquitin and ubiquitin-likeFamily
GA [auth g]IPR000626Ubiquitin-like domainDomain
GA [auth g]IPR019956Ubiquitin domainDomain
GA [auth g]IPR001975Large ribosomal subunit protein eL40 domainDomain
GA [auth g]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
HA [auth h]IPR002769Translation initiation factor IF6Family
IA [auth i]IPR000552Large ribosomal subunit protein eL42Family
IA [auth i]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
IA [auth i]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
JA [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
JA [auth j]IPR002674Large ribosomal subunit protein eL43Family
JA [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
KA [auth k]IPR029004Ribosomal eL28/Mak16Domain
KA [auth k]IPR002672Large ribosomal subunit protein eL28Family
LA [auth l]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
LA [auth l]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
LA [auth l]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
LA [auth l]IPR000439Large ribosomal subunit protein eL15Family
MA [auth m]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
MA [auth m]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
MA [auth m]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
MA [auth m]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
MA [auth m]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
MA [auth m]IPR039699Large ribosomal subunit protein uL30Family
MA [auth m]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
NA [auth n]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
NA [auth n]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
NA [auth n]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
NA [auth n]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
NA [auth n]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
NA [auth n]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
OA [auth o]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
OA [auth o]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
OA [auth o]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
OA [auth o]IPR000702Large ribosomal subunit protein uL6-likeFamily
PA [auth p]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
PA [auth p]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
PA [auth p]IPR047873Large ribosomal subunit protein uL16Family
PA [auth p]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
PA [auth p]IPR016180Large ribosomal subunit protein uL16 domainDomain
QA [auth q]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
QA [auth q]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
QA [auth q]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
QA [auth q]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
QA [auth q]IPR002132Large ribosomal subunit protein uL5Family
RA [auth r]IPR001380Large ribosomal subunit protein eL13Family
RA [auth r]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
SA [auth s]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
SA [auth s]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
SA [auth s]IPR039660Large ribosomal subunit protein eL14Family
SA [auth s]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
SA [auth s]IPR002784Large ribosomal subunit protein eL14 domainDomain
TA [auth 0]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
TA [auth 0]IPR013087Zinc finger C2H2-typeDomain
TA [auth 0]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
TA [auth 0]IPR040025Zinc finger protein 622/Rei1/Reh1Family
TA [auth 0]IPR041661ZN622/Rei1/Reh1, zinc finger C2H2-typeDomain
TA [auth 0]IPR022755Zinc finger, double-stranded RNA bindingDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP39023
PharosP36578
PharosP46777
PharosQ02878
PharosP40429
PharosP18621
PharosQ07020
PharosP84098
PharosP46778
PharosP35268
PharosP62829
PharosP83731
PharosP62750
PharosP61254
PharosP61353
PharosP46776
PharosP62888
PharosP62899
PharosP62910
PharosP18077
AA [auth a]PharosP49207
BA [auth b]PharosP42766
CA [auth c]PharosQ9Y3U8
DA [auth d]PharosP61927
EA [auth e]PharosP63173
GA [auth g]PharosP62987
HA [auth h]PharosP56537
IA [auth i]PharosP83881
JA [auth j]PharosP61513
KA [auth k]PharosP46779
LA [auth l]PharosP61313
MA [auth m]PharosP18124
NA [auth n]PharosP62424
OA [auth o]PharosP32969
PA [auth p]PharosP27635
QA [auth q]PharosP62913
RA [auth r]PharosP26373
SA [auth s]PharosP50914
TA [auth 0]PharosQ969S3