Annotations: 9GKO

Structure of 6mer pore intermediate of Sticholysin II (StnII) toxin in lipid nanodiscs

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth G]	SCOP2B Superfamily	Cytolysin/lectin	8044473	3000379	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	Cytolysin/lectin	8044473	3000379	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Cytolysin/lectin	8044473	3000379	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	Cytolysin/lectin	8044473	3000379	SCOP2B (2022-06-29)
B [auth n]	SCOP2B Superfamily	Cytolysin/lectin	8044473	3000379	SCOP2B (2022-06-29)
A [auth E]	SCOP2B Superfamily	Cytolysin/lectin	8044473	3000379	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth G]	Beta-Casp	e9gkoG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
E [auth D]	Beta-Casp	e9gkoD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
D [auth C]	Beta-Casp	e9gkoC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
C [auth A]	Beta-Casp	e9gkoA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
B [auth n]	Beta-Casp	e9gkon1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
A [auth E]	Beta-Casp	e9gkoE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E], B [auth n], C [auth A], D [auth C], E [auth D], A [auth E], B [auth n], C [auth A], D [auth C], E [auth D], F [auth G]	DELTA-stichotoxin-She4b	toxin activity passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity identical protein binding protein binding binding	biological process involved in interspecies interaction between organisms cytolysis in another organism cellular process disruption of cell in another organism disruption of anatomical structure in another organism cytolysis killing of cells of another organism cell killing localization transport monoatomic ion transport monoatomic cation transport establishment of localization cellular component organization biological process involved in interspecies interaction between organisms cytolysis in another organism cellular process disruption of cell in another organism disruption of anatomical structure in another organism cytolysis killing of cells of another organism cell killing localization transport monoatomic ion transport monoatomic cation transport establishment of localization cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular component organization or biogenesis pore complex assembly	cellular anatomical structure extracellular region cell periphery intracellular organelle cell cortex intracellular anatomical structure organelle membraneless organelle nematocyst intracellular membraneless organelle cytoplasm other organism cell membrane other organism part protein-containing complex cellular anatomical structure extracellular region cell periphery intracellular organelle cell cortex intracellular anatomical structure organelle membraneless organelle nematocyst intracellular membraneless organelle cytoplasm other organism cell membrane other organism part protein-containing complex membrane pore complex membrane protein complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E], B [auth n], C [auth A], D [auth C], E [auth D], A [auth E], B [auth n], C [auth A], D [auth C], E [auth D], F [auth G]	IPR015926	Cytolysin/lectin	Homologous Superfamily
A [auth E], B [auth n], C [auth A], D [auth C], E [auth D], A [auth E], B [auth n], C [auth A], D [auth C], E [auth D], F [auth G]	IPR050677	Actinoporin Pore-Forming Toxin	Family
A [auth E], B [auth n], C [auth A], D [auth C], E [auth D], A [auth E], B [auth n], C [auth A], D [auth C], E [auth D], F [auth G]	IPR009104	Sea anemone actinoporin-like	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9GKO | pdb_00009gko

Structure of 6mer pore intermediate of Sticholysin II (StnII) toxin in lipid nanodiscs

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage