9FOR

Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C (variant 1)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth o], C [auth A], E [auth C], G [auth E], I [auth G]	PF20910	TAR DNA-binding protein 43, C-terminal (TDP-43_C)	TAR DNA-binding protein 43, C-terminal	-	Disordered

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth o], C [auth A], E [auth C], G [auth E], I [auth G]	TAR DNA-binding protein 43	DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding organic cyclic compound binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular condensate scaffold activity protein-macromolecule adaptor activity DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding organic cyclic compound binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular condensate scaffold activity protein-macromolecule adaptor activity molecular adaptor activity mRNA 3'-UTR binding RNA binding mRNA binding lipid binding pre-mRNA binding pre-mRNA intronic binding identical protein binding protein binding	viral gene expression biological process involved in interspecies interaction between organisms negative regulation by host of viral transcription modulation by host of symbiont process viral process biological process involved in interaction with symbiont viral transcription biological process involved in symbiotic interaction membrane organization cellular component organization nucleus organization organelle organization nuclear envelope organization nuclear inner membrane organization viral gene expression biological process involved in interspecies interaction between organisms negative regulation by host of viral transcription modulation by host of symbiont process viral process biological process involved in interaction with symbiont viral transcription biological process involved in symbiotic interaction membrane organization cellular component organization nucleus organization organelle organization nuclear envelope organization nuclear inner membrane organization cellular process cellular component organization or biogenesis endomembrane system organization nuclear membrane organization rhythmic process regulation of biological process circadian rhythm biological regulation regulation of circadian rhythm organonitrogen compound metabolic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process supramolecular fiber organization amyloid fibril formation regulation of biosynthetic process regulation of cellular process cellular biosynthetic process cellular metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process regulation of metabolic process regulation of protein modification process regulation of protein phosphorylation negative regulation of biological process negative regulation of phosphate metabolic process negative regulation of cellular metabolic process regulation of primary metabolic process regulation of phosphate metabolic process phosphate-containing compound metabolic process negative regulation of protein modification process negative regulation of cellular process protein modification process phosphorus metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process protein phosphorylation phosphorylation regulation of protein metabolic process negative regulation of metabolic process negative regulation of protein phosphorylation macromolecule modification negative regulation of phosphorus metabolic process regulation of phosphorylation regulation of phosphorus metabolic process negative regulation of phosphorylation regulation of apoptotic process apoptotic process regulation of programmed cell death cell death programmed cell death 3'-UTR-mediated mRNA destabilization nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA catabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of mRNA metabolic process negative regulation of cellular biosynthetic process nucleobase-containing compound catabolic process positive regulation of RNA metabolic process negative regulation of gene expression negative regulation of macromolecule biosynthetic process nucleic acid catabolic process catabolic process positive regulation of biological process RNA metabolic process mRNA destabilization macromolecule catabolic process regulation of mRNA catabolic process RNA destabilization regulation of catabolic process mRNA metabolic process nucleic acid metabolic process positive regulation of catabolic process regulation of mRNA stability positive regulation of mRNA catabolic process negative regulation of biosynthetic process regulation of RNA stability regulation of mRNA metabolic process nucleobase-containing compound biosynthetic process mRNA processing RNA biosynthetic process nucleic acid biosynthetic process RNA processing protein localization regulation of localization cellular localization establishment of protein localization nitrogen compound transport regulation of protein localization nucleocytoplasmic transport transport positive regulation of nucleocytoplasmic transport nuclear transport positive regulation of establishment of protein localization regulation of protein localization to nucleus positive regulation of protein transport localization import into nucleus regulation of protein import into nucleus cellular macromolecule localization establishment of localization in cell protein import into nucleus positive regulation of intracellular transport positive regulation of cellular process regulation of intracellular transport regulation of transport positive regulation of protein localization to nucleus regulation of establishment of protein localization positive regulation of protein import into nucleus intracellular transport regulation of nucleocytoplasmic transport protein localization to nucleus regulation of protein transport establishment of localization positive regulation of transport establishment of protein localization to organelle regulation of cellular localization protein transport macromolecule localization protein localization to organelle positive regulation of protein localization regulation of intracellular protein transport positive regulation of intracellular protein transport intracellular protein transport RNA splicing regulation of protein stability cell cycle regulation of cell cycle positive regulation of macromolecule biosynthetic process negative regulation of nucleobase-containing compound metabolic process mRNA stabilization negative regulation of RNA metabolic process positive regulation of cellular metabolic process negative regulation of mRNA metabolic process 3'-UTR-mediated mRNA stabilization positive regulation of biosynthetic process negative regulation of catabolic process negative regulation of mRNA catabolic process negative regulation of RNA catabolic process RNA stabilization positive regulation of gene expression positive regulation of cellular biosynthetic process positive regulation of cell communication cell communication positive regulation of insulin secretion regulation of peptide hormone secretion regulation of hormone levels positive regulation of peptide hormone secretion establishment of protein localization to extracellular region protein secretion regulation of protein secretion regulation of secretion regulation of hormone secretion regulation of peptide secretion signaling positive regulation of secretion by cell hormone secretion protein localization to extracellular region peptide secretion secretion by cell regulation of secretion by cell positive regulation of hormone secretion positive regulation of secretion amide transport signal release positive regulation of peptide secretion regulation of signaling secretion regulation of peptide transport cell-cell signaling export from cell positive regulation of protein secretion peptide transport regulation of insulin secretion peptide hormone secretion hormone transport regulation of cell communication insulin secretion positive regulation of signaling cellular response to stimulus cellular response to stress response to stimulus response to stress response to endoplasmic reticulum stress	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex protein-DNA complex nucleus membrane-enclosed lumen perichromatin fibrils nuclear chromosome membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex protein-DNA complex nucleus membrane-enclosed lumen perichromatin fibrils nuclear chromosome chromosome chromatin intracellular organelle lumen organelle lumen intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle cytoplasmic ribonucleoprotein granule ribonucleoprotein granule supramolecular complex cytoplasmic stress granule nuclear speck nuclear body nucleoplasm interchromatin granule
B [auth p], D [auth B], F [auth D], H [auth F], J [auth H]	Annexin A11	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein-containing complex binding MHC protein complex binding MHC class II protein complex binding RNA binding organic cyclic compound binding nucleic acid binding calcium-dependent phospholipid binding phospholipid binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein-containing complex binding MHC protein complex binding MHC class II protein complex binding RNA binding organic cyclic compound binding nucleic acid binding calcium-dependent phospholipid binding phospholipid binding lipid binding phosphatidylethanolamine binding protein binding S100 protein binding calcium-dependent protein binding modified amino acid binding phosphatidylserine binding	response to stimulus response to metal ion response to chemical response to calcium ion localization import into cell transport phagocytosis cellular process endocytosis establishment of localization vesicle-mediated transport cytokinetic process cell cycle response to stimulus response to metal ion response to chemical response to calcium ion localization import into cell transport phagocytosis cellular process endocytosis establishment of localization vesicle-mediated transport cytokinetic process cell cycle cytokinesis cell division cell cycle process	midbody cellular anatomical entity membrane membrane-bounded organelle intracellular anatomical structure pigment granule intracellular vesicle intracellular membrane-bounded organelle intracellular organelle melanosome cytoplasmic vesicle organelle cytoplasm vesicle midbody cellular anatomical entity membrane membrane-bounded organelle intracellular anatomical structure pigment granule intracellular vesicle intracellular membrane-bounded organelle intracellular organelle melanosome cytoplasmic vesicle organelle cytoplasm vesicle organelle envelope nuclear envelope nucleus endomembrane system extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle cell periphery extracellular matrix external encapsulating structure collagen-containing extracellular matrix cytosol phagocytic vesicle endocytic vesicle plasma membrane vesicle membrane organelle membrane membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen lytic vacuole azurophil granule vacuole secretory granule primary lysosome secretory vesicle lysosome cytoskeleton spindle intracellular non-membrane-bounded organelle microtubule cytoskeleton non-membrane-bounded organelle specific granule

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth o], C [auth A], E [auth C], G [auth E], I [auth G]	IPR000504	RNA recognition motif domain	Domain
A [auth o], C [auth A], E [auth C], G [auth E], I [auth G]	IPR049124	TAR DNA-binding protein 43, C-terminal	Domain
A [auth o], C [auth A], E [auth C], G [auth E], I [auth G]	IPR041105	TAR DNA-binding protein 43, N-terminal	Domain
A [auth o], C [auth A], E [auth C], G [auth E], I [auth G]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
A [auth o], C [auth A], E [auth C], G [auth E], I [auth G]	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
B [auth p], D [auth B], F [auth D], H [auth F], J [auth H]	IPR001464	Annexin	Family
B [auth p], D [auth B], F [auth D], H [auth F], J [auth H]	IPR018252	Annexin repeat, conserved site	Conserved Site
B [auth p], D [auth B], F [auth D], H [auth F], J [auth H]	IPR008157	Annexin A11	Family
B [auth p], D [auth B], F [auth D], H [auth F], J [auth H]	IPR037104	Annexin superfamily	Homologous Superfamily
B [auth p], D [auth B], F [auth D], H [auth F], J [auth H]	IPR018502	Annexin repeat	Repeat

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth o], C [auth A], E [auth C], G [auth E], I [auth G]	Pharos: Q13148	amyotrophic lateral sclerosis amyotrophic lateral sclerosis type 10 Frontotemporal Lobar Degeneration neurodegenerative disease intellectual disability Pick disease acute myeloid leukemia androgenetic alopecia brain disease diabetes mellitus frontotemporal dementia with motor neuron disease juvenile dermatomyositis osteosarcoma plasma cell myeloma aphasia amyotrophic lateral sclerosis amyotrophic lateral sclerosis type 10 Frontotemporal Lobar Degeneration neurodegenerative disease intellectual disability Pick disease acute myeloid leukemia androgenetic alopecia brain disease diabetes mellitus frontotemporal dementia with motor neuron disease juvenile dermatomyositis osteosarcoma plasma cell myeloma aphasia dementia Ewing sarcoma lung carcinoma ovarian cancer astrocytic tumor dermatomyositis frontotemporal dementia
B [auth p], D [auth B], F [auth D], H [auth F], J [auth H]	Pharos: P50995	sarcoidosis amyotrophic lateral sclerosis Pick disease B-cell chronic lymphocytic leukemia lung cancer myopathy non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm primitive neuroectodermal tumor spina bifida amyotrophic lateral sclerosis type 23 invasive ductal breast carcinoma malignant mesothelioma nasopharyngeal carcinoma sarcoidosis amyotrophic lateral sclerosis Pick disease B-cell chronic lymphocytic leukemia lung cancer myopathy non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm primitive neuroectodermal tumor spina bifida amyotrophic lateral sclerosis type 23 invasive ductal breast carcinoma malignant mesothelioma nasopharyngeal carcinoma oligodendroglioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis astrocytic tumor large cell medulloblastoma medulloblastoma neurodegenerative disease osteosarcoma pancreatic intraductal papillary-mucinous carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.