Annotations: 9DI4

RMI1-RMI2 bound to cyclic peptide L4

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Nucleic acid-binding proteins	8053467	3000135	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Nucleic acid-binding proteins	8053535	3000135	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF16100	RecQ-mediated genome instability protein 2 (RMI2)	RecQ-mediated genome instability protein 2	RMI2 is a eukaryotic family of an OB3, oligo-nucleotide-binding proteins. It is an essential component of the RMI complex that plays a vital role in the processing of homologous recombination intermediates in order to limit DNA-crossover-formation in ...	RMI2 is a eukaryotic family of an OB3, oligo-nucleotide-binding proteins. It is an essential component of the RMI complex that plays a vital role in the processing of homologous recombination intermediates in order to limit DNA-crossover-formation in cells [1].	Domain
A	PF16099	Recq-mediated genome instability protein 1, C-terminal OB-fold (RMI1_C)	Recq-mediated genome instability protein 1, C-terminal OB-fold	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	RecQ-mediated genome instability protein 2	DNA binding binding nucleic acid binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus regulation of DNA recombination regulation of cellular process response to stimulus regulation of double-strand break repair regulation of cellular response to stress nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus regulation of DNA recombination regulation of cellular process response to stimulus regulation of double-strand break repair regulation of cellular response to stress negative regulation of biological process regulation of primary metabolic process negative regulation of DNA repair cellular response to stress response to stress regulation of response to stress negative regulation of double-strand break repair negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process recombinational repair regulation of nucleobase-containing compound metabolic process negative regulation of double-strand break repair via homologous recombination double-strand break repair via homologous recombination DNA repair negative regulation of macromolecule metabolic process double-strand break repair regulation of biological process negative regulation of response to stimulus negative regulation of metabolic process DNA recombination biological regulation regulation of macromolecule metabolic process regulation of DNA repair regulation of double-strand break repair via homologous recombination negative regulation of DNA recombination DNA damage response regulation of response to stimulus negative regulation of DNA metabolic process regulation of metabolic process regulation of DNA metabolic process resolution of DNA recombination intermediates regulation of chromosome segregation regulation of cellular component organization regulation of cell cycle process chromosome organization sister chromatid segregation regulation of chromosome organization regulation of organelle organization cellular component organization organelle organization regulation of sister chromatid segregation nuclear chromosome segregation cell cycle cellular component organization or biogenesis regulation of cell cycle chromosome segregation cell cycle process maintenance of DNA repeat elements maintenance of rDNA	protein-containing complex intracellular anatomical structure catalytic complex intracellular membraneless organelle chromosome intracellular organelle cellular anatomical structure RecQ family helicase-topoisomerase III complex organelle membraneless organelle DNA helicase complex membrane-bounded organelle nucleus membrane-enclosed lumen protein-containing complex intracellular anatomical structure catalytic complex intracellular membraneless organelle chromosome intracellular organelle cellular anatomical structure RecQ family helicase-topoisomerase III complex organelle membraneless organelle DNA helicase complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule nuclear body nucleoplasm organelle lumen supramolecular complex nuclear ribonucleoprotein granule nuclear lumen cytoplasm cytosol
C	L4 cyclic peptide	-	-	-
A	RecQ-mediated genome instability protein 1	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process resolution of DNA recombination intermediates DNA recombination reduction of food intake in response to dietary excess multicellular organismal process response to nutrient levels response to stimulus nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process resolution of DNA recombination intermediates DNA recombination reduction of food intake in response to dietary excess multicellular organismal process response to nutrient levels response to stimulus homeostatic process eating behavior feeding behavior behavior multicellular organismal-level homeostasis response to dietary excess energy homeostasis cellular response to stimulus double-strand break repair cellular response to stress DNA damage response response to stress recombinational repair double-strand break repair via homologous recombination DNA repair sexual reproduction homologous recombination reproductive process resolution of meiotic recombination intermediates meiotic cell cycle process cellular component organization meiosis I meiotic nuclear division cell cycle cellular component organization or biogenesis reciprocal homologous recombination cell cycle process meiotic cell cycle organelle fission reciprocal meiotic recombination nuclear division organelle organization meiosis I cell cycle process developmental process multicellular organism growth developmental growth growth response to hexose response to monosaccharide response to carbohydrate response to glucose response to chemical response to oxygen-containing compound chemical homeostasis glucose homeostasis carbohydrate homeostasis	protein-containing complex intracellular anatomical structure catalytic complex intracellular membraneless organelle chromosome intracellular organelle cellular anatomical structure RecQ family helicase-topoisomerase III complex organelle membraneless organelle DNA helicase complex membrane-bounded organelle nucleus membrane-enclosed lumen protein-containing complex intracellular anatomical structure catalytic complex intracellular membraneless organelle chromosome intracellular organelle cellular anatomical structure RecQ family helicase-topoisomerase III complex organelle membraneless organelle DNA helicase complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear body nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR032245	RecQ-mediated genome instability protein 2	Family
B	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
A	IPR013894	RecQ mediated genome instability protein 1, OB-fold domain	Domain
A	IPR042470	RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily	Homologous Superfamily
A	IPR032199	RecQ-mediated genome instability protein 1, C-terminal OB-fold domain	Domain
A	IPR049363	RMI1, N-terminal domain	Domain
A	IPR044881	RecQ-mediated genome instability protein 1, N-terminal helical domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	: Q96E14	ovarian cancer adrenal cortex carcinoma atypical teratoid rhabdoid tumor Crohn disease inflammatory bowel disease leprosy nasal cavity disease oligodendroglioma primary biliary cholangitis allergic rhinitis breast cancer drug dependence interstitial cystitis lung adenocarcinoma nasopharyngeal carcinoma ovarian cancer adrenal cortex carcinoma atypical teratoid rhabdoid tumor Crohn disease inflammatory bowel disease leprosy nasal cavity disease oligodendroglioma primary biliary cholangitis allergic rhinitis breast cancer drug dependence interstitial cystitis lung adenocarcinoma nasopharyngeal carcinoma osteosarcoma psoriasis astrocytic tumor celiac disease ductal breast carcinoma in situ invasive ductal breast carcinoma malignant ependymoma non-small cell lung carcinoma
A	: Q9H9A7	attention deficit hyperactivity disorder, inattentive type breast cancer hepatocellular carcinoma malignant ependymoma non-small cell lung carcinoma atypical teratoid rhabdoid tumor breast carcinoma invasive ductal breast carcinoma malignant mesothelioma pancreatic intraductal papillary-mucinous neoplasm Bloom syndrome ductal breast carcinoma in situ lung cancer medulloblastoma primitive neuroectodermal tumor

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C	ACE	: AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 : N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359
C	NH2	: AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 , AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 : N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 , L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.