9DCB | pdb_00009dcb

The Structure of AAV5 at 4 Degrees

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
ZA [auth z]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
YA [auth y]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
XA [auth x]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
WA [auth w]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
VA [auth v]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
UA [auth u]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
TA [auth t]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
SA [auth s]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
RA [auth r]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
QA [auth q]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
PA [auth p]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
OA [auth o]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
NA [auth n]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
MA [auth m]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
LA [auth l]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
KA [auth k]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
JA [auth j]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
IA [auth i]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
HB [auth 8]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
HA [auth h]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
GB [auth 7]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
GA [auth g]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
FB [auth 6]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
FA [auth f]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
EB [auth 5]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
EA [auth e]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
DB [auth 4]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
CB [auth 3]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
BB [auth 2]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
AB [auth 1]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
AA [auth a]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth z]	WD40	e9dcbz1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Z	WD40	e9dcbZ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
YA [auth y]	WD40	e9dcby1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Y	WD40	e9dcbY1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
XA [auth x]	WD40	e9dcbx1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
X	WD40	e9dcbX1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
WA [auth w]	WD40	e9dcbw1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
W	WD40	e9dcbW1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
VA [auth v]	WD40	e9dcbv1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
V	WD40	e9dcbV1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
UA [auth u]	WD40	e9dcbu1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
U	WD40	e9dcbU1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
TA [auth t]	WD40	e9dcbt1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
T	WD40	e9dcbT1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
SA [auth s]	WD40	e9dcbs1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
S	WD40	e9dcbS1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
RA [auth r]	WD40	e9dcbr1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
R	WD40	e9dcbR1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
QA [auth q]	WD40	e9dcbq1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Q	WD40	e9dcbQ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
PA [auth p]	WD40	e9dcbp1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
P	WD40	e9dcbP1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
OA [auth o]	WD40	e9dcbo1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
O	WD40	e9dcbO1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
NA [auth n]	WD40	e9dcbn1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
N	WD40	e9dcbN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
MA [auth m]	WD40	e9dcbm1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
M	WD40	e9dcbM1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
LA [auth l]	WD40	e9dcbl1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
L	WD40	e9dcbL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
KA [auth k]	WD40	e9dcbk1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
K	WD40	e9dcbK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
JA [auth j]	WD40	e9dcbj1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
J	WD40	e9dcbJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
IA [auth i]	WD40	e9dcbi1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
I	WD40	e9dcbI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
HB [auth 8]	WD40	e9dcb81	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
HA [auth h]	WD40	e9dcbh1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
H	WD40	e9dcbH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
GB [auth 7]	WD40	e9dcb71	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
GA [auth g]	WD40	e9dcbg1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
G	WD40	e9dcbG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
FB [auth 6]	WD40	e9dcb61	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
FA [auth f]	WD40	e9dcbf1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
F	WD40	e9dcbF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
EB [auth 5]	WD40	e9dcb51	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
EA [auth e]	WD40	e9dcbe1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
E	WD40	e9dcbE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
DB [auth 4]	WD40	e9dcb41	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
DA [auth d]	WD40	e9dcbd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
D	WD40	e9dcbD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
CB [auth 3]	WD40	e9dcb31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
CA [auth c]	WD40	e9dcbc1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C	WD40	e9dcbC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
BB [auth 2]	WD40	e9dcb21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
BA [auth b]	WD40	e9dcbb1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B	WD40	e9dcbB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
AB [auth 1]	WD40	e9dcb11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
AA [auth a]	WD40	e9dcba1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
A	WD40	e9dcbA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	Capsid protein	structural molecule activity	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid
AC [auth IA], AD [auth lA], BC [auth KA], BD [auth mA], CC [auth LA], AC [auth IA], AD [auth lA], BC [auth KA], BD [auth mA], CC [auth LA], CD [auth nA], DC [auth MA], DD [auth oA], EC [auth NA], ED [auth pA], FC [auth OA], FD [auth rA], GC [auth PA], GD [auth sA], HC [auth QA], HD [auth tA], IB [auth 0], IC [auth RA], ID [auth uA], JB [auth JA], JC [auth SA], JD [auth vA], KB [auth UA], KC [auth TA], KD [auth wA], LB [auth fA], LC [auth VA], LD [auth xA], MB [auth qA], MC [auth WA], MD [auth yA], NB [auth 1A], NC [auth XA], ND [auth zA], OB [auth 3A], OC [auth YA], OD [auth 0A], PB [auth 4A], PC [auth ZA], PD [auth 2A], QB [auth 5A], QC [auth aA], RB [auth 9], RC [auth bA], SB [auth AA], SC [auth cA], TB [auth BA], TC [auth dA], UB [auth CA], UC [auth eA], VB [auth DA], VC [auth gA], WB [auth EA], WC [auth hA], XB [auth FA], XC [auth iA], YB [auth GA], YC [auth jA], ZB [auth HA], ZC [auth kA]	DNA (5'-D(PAPA)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR013607	Phospholipase A2-like domain	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.