Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4 (local mask)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C [auth D] | SCOP2B Superfamily | Cyclin-like | 8032436 | 3000768 | SCOP2B (2022-06-29) |
| C [auth D] | SCOP2B Superfamily | Cyclin-like | 8032437 | 3000768 | SCOP2B (2022-06-29) |
| B [auth C] | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8040310 | 3000066 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth D] | WD40 | e9d0xD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| B [auth C] | WD40 | e9d0xC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| A [auth B] | WD40 | e9d0xB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| C [auth D] | PF02984 | Cyclin, C-terminal domain (Cyclin_C) | Cyclin, C-terminal domain | Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins [4]. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the C-terminal domain. | Domain |
| C [auth D] | PF00134 | Cyclin, N-terminal domain (Cyclin_N) | Cyclin, N-terminal domain | Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins [4]. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. | Domain |
| B [auth C] | PF00069 | Protein kinase domain (Pkinase) | Protein kinase domain | Domain | |
| A [auth B] | PF02190 | ATP-dependent protease La (LON) substrate-binding domain (LON_substr_bdg) | ATP-dependent protease La (LON) substrate-binding domain | - | Family |
| A [auth B] | PF03226 | Yippee zinc-binding/DNA-binding /Mis18, centromere assembly (Yippee-Mis18) | Yippee zinc-binding/DNA-binding /Mis18, centromere assembly | This family includes both Yippee-type proteins and Mis18 kinetochore proteins. Yippee are putative zinc-binding/DNA-binding proteins. Mis18 are proteins involved in the priming of centromeres for recruiting CENP-A. Mis18-alpha and beta form part of ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| C [auth D] | IPR048258 | Cyclins, cyclin-box | Conserved Site |
| C [auth D] | IPR004367 | Cyclin, C-terminal domain | Domain |
| C [auth D] | IPR006671 | Cyclin, N-terminal | Domain |
| C [auth D] | IPR036915 | Cyclin-like superfamily | Homologous Superfamily |
| C [auth D] | IPR039361 | Cyclin | Family |
| C [auth D] | IPR013763 | Cyclin-like domain | Domain |
| B [auth C] | IPR000719 | Protein kinase domain | Domain |
| B [auth C] | IPR050108 | Cyclin-dependent kinase | Family |
| B [auth C] | IPR017441 | Protein kinase, ATP binding site | Binding Site |
| B [auth C] | IPR011009 | Protein kinase-like domain superfamily | Homologous Superfamily |
| B [auth C] | IPR008271 | Serine/threonine-protein kinase, active site | Active Site |
| A [auth B] | IPR015947 | PUA-like superfamily | Homologous Superfamily |
| A [auth B] | IPR046336 | Lon protease, N-terminal domain superfamily | Homologous Superfamily |
| A [auth B] | IPR004910 | Yippee/Mis18/Cereblon | Domain |
| A [auth B] | IPR003111 | Lon protease, N-terminal domain | Domain |
| A [auth B] | IPR034750 | CULT domain | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| B [auth C] | TPO | Parent Component: THR :  AA0038 :  O-phospho-L-threonine MOD:00047 |














