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 9CC7 | pdb_00009cc7

Bacteriophage PhiTE extended connector complex

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth F]e9cc7F1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: Hypothetical protein YqbG-likeF:ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth G],
E [auth H]		PF11681Bacteriophage PhiTE tail tube protein (Phage_Tube_PhiTE)Bacteriophage PhiTE tail tube proteinThis entry includes the tail tube protein of bacteriophage PhiTE that infects the plant pathogen Pectobacterium atrosepticum. The tube protein forms the rigid inner tube of the phage tail and consists of a primary eight-stranded beta-sandwich flanked ...This entry includes the tail tube protein of bacteriophage PhiTE that infects the plant pathogen Pectobacterium atrosepticum. The tube protein forms the rigid inner tube of the phage tail and consists of a primary eight-stranded beta-sandwich flanked by a large alpha-helix. The luminal components of each tube protein's beta-sandwich intercalate with adjacent tube proteins in the hexameric disk to form a continuous 24-stranded beta-barrel on the internal surface of each ring. The inner tube lumen has a strong negative charge distribution, typical of bacteriophage DNA conduits. An extended beta-hairpin motif extends between strands 2 and 5 of the beta-sandwich and wraps around the tube, making contacts with loops from head distal tube subunits. The C-terminal arm features a second alpha-helix that wraps laterally around adjacent subunits and forms strong hydrophobic contacts with helices from the sheath D1 domain.
Domain
C [auth F]PF23961Phage neck terminator protein (Phage_tail_terminator_9)Phage neck terminator proteinThis entry represents the neck terminator protein gp12 from cyanophage Pam3 [1]. Six gp12 subunits form a hexameric ring that terminates neck assembly and links to the tail tube/sheath. Each subunit has an N-terminal loop, a conserved globular domain ...This entry represents the neck terminator protein gp12 from cyanophage Pam3 [1]. Six gp12 subunits form a hexameric ring that terminates neck assembly and links to the tail tube/sheath. Each subunit has an N-terminal loop, a conserved globular domain, and a protruding beta-sheet domain.
Domain
B [auth E]PF05521Phage head completion protein (Phage_HCP)Phage head completion proteinThis entry represents the head completion protein (gp16) found in Siphoviridae bacteriophages. This protein functions as a stopper in the portal-tail connector complex, locking the viral DNA inside the capsid. During infection, it undergoes a conform ...This entry represents the head completion protein (gp16) found in Siphoviridae bacteriophages. This protein functions as a stopper in the portal-tail connector complex, locking the viral DNA inside the capsid. During infection, it undergoes a conformational change, opening by a diaphragm-like motion to allow the genome to exit the capsid through the tail tube to the host cell. The protein also functions as a docking platform for the preassembled tail. The connector complex is essential for stable viral particle assembly and controlled genome release during host infection.
Domain
A [auth D],
F [auth C]		PF26075Bacteriophage PhiTE adapter protein (Phage_Adaptor_PhiTE)Bacteriophage PhiTE adapter protein- Family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth G],
E [auth H]		IPR021695Structural protein ORF10, bacteriophage KPP10Family
C [auth F]IPR057087Phage neck terminator protein gp12-likeDomain
B [auth E]IPR008767Bacteriophage SPP1, head-tail adaptorFamily
A [auth D],
F [auth C]		IPR058761PhiTE adapter protein-likeFamily