Annotations: 9C9I

Structure of the TSC1:WIPI3 complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth G]	WD40	e9c9iG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C [auth E]	WD40	e9c9iE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B [auth C]	WD40	e9c9iC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
A	MCM_lid	e9c9iA01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MCM_lid	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C], C [auth E], D [auth G]	PF21032	PROPPIN (PROPPIN)	PROPPIN	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C], C [auth E], D [auth G]	WD repeat domain phosphoinositide-interacting protein 3	phosphatidylinositol-3,5-bisphosphate binding ion binding binding anion binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding small molecule binding phosphatidylinositol-3-phosphate binding protein-containing complex binding TSC1-TSC2 complex binding protein-macromolecule adaptor activity molecular adaptor activity	carbohydrate metabolic process catabolic process glucan catabolic process energy derivation by oxidation of organic compounds macroautophagy glycogen metabolic process carbohydrate catabolic process autophagy primary metabolic process generation of precursor metabolites and energy macromolecule catabolic process polysaccharide metabolic process glucan metabolic process glycogen catabolic process glycophagy carbohydrate metabolic process catabolic process glucan catabolic process energy derivation by oxidation of organic compounds macroautophagy glycogen metabolic process carbohydrate catabolic process autophagy primary metabolic process generation of precursor metabolites and energy macromolecule catabolic process polysaccharide metabolic process glucan metabolic process glycogen catabolic process glycophagy polysaccharide catabolic process metabolic process cellular process energy reserve metabolic process macromolecule metabolic process process utilizing autophagic mechanism cellular response to stimulus cellular response to nutrient levels response to nutrient levels response to stimulus cellular response to stress response to stress response to starvation cellular response to starvation autophagy of mitochondrion autophagosome assembly organelle assembly vacuole organization autophagosome organization cellular component biogenesis cellular component organization organelle organization cellular component assembly cellular component organization or biogenesis nucleophagy autophagy of peroxisome pexophagy localization macromolecule localization protein localization to phagophore assembly site intracellular protein localization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol phagophore assembly site membrane membrane phagophore assembly site membrane-bounded organelle intracellular organelle organelle lytic vacuole vacuole intracellular membrane-bounded organelle lysosome
E [auth X], F [auth B], G [auth D], H [auth F], I [auth H]	Hamartin	Hsp90 protein binding protein binding binding heat shock protein binding molecular function inhibitor activity molecular function regulator activity ATPase inhibitor activity Hsp70 protein binding protein-folding chaperone binding protein folding chaperone	cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process regulation of biological process regulation of cellular process regulation of cell-matrix adhesion regulation of cell-substrate adhesion regulation of cell adhesion biological regulation regulation of protein stability regulation of biological quality protein stabilization adult locomotory behavior cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process regulation of biological process regulation of cellular process regulation of cell-matrix adhesion regulation of cell-substrate adhesion regulation of cell adhesion biological regulation regulation of protein stability regulation of biological quality protein stabilization adult locomotory behavior behavior multicellular organismal process adult behavior locomotory behavior regulation of cytoskeleton organization regulation of cellular component organization regulation of actin filament-based process regulation of actin filament bundle assembly cellular component biogenesis cellular component organization cellular component assembly actin filament bundle organization actin filament-based process cellular component organization or biogenesis stress fiber assembly regulation of actin filament organization actin cytoskeleton organization actomyosin structure organization actin filament organization regulation of cellular component biogenesis regulation of organelle organization regulation of stress fiber assembly organelle organization contractile actin filament bundle assembly regulation of actomyosin structure organization regulation of actin cytoskeleton organization actin filament bundle assembly regulation of supramolecular fiber organization supramolecular fiber organization cytoskeleton organization negative regulation of ATP-dependent activity regulation of ATP-dependent activity regulation of molecular function negative regulation of molecular function negative regulation of catabolic process catabolic process macroautophagy negative regulation of metabolic process autophagy negative regulation of biological process regulation of catabolic process regulation of autophagy negative regulation of macroautophagy regulation of macroautophagy negative regulation of autophagy negative regulation of cellular process metabolic process process utilizing autophagic mechanism regulation of metabolic process positive regulation of cellular component organization cell-substrate junction assembly positive regulation of cell-substrate junction organization positive regulation of biological process cell junction assembly positive regulation of cell-substrate adhesion regulation of cell-substrate junction organization positive regulation of cellular process focal adhesion assembly positive regulation of focal adhesion assembly positive regulation of cellular component biogenesis positive regulation of cell adhesion positive regulation of cell-matrix adhesion regulation of cell junction assembly positive regulation of cell junction assembly cell junction organization cell-substrate junction organization regulation of focal adhesion assembly regulation of cell-substrate junction assembly cellular response to stimulus response to decreased oxygen levels cellular response to chemical stimulus response to stimulus cellular response to oxygen levels response to chemical response to oxygen levels cellular response to decreased oxygen levels response to abiotic stimulus cellular response to nutrient levels response to nutrient levels cellular response to stress response to stress response to starvation cellular response to starvation negative regulation of signaling signaling negative regulation of intracellular signal transduction regulation of signal transduction negative regulation of cell communication intracellular signal transduction cell communication negative regulation of TOR signaling regulation of intracellular signal transduction signal transduction TOR signaling regulation of signaling regulation of TOR signaling negative regulation of response to stimulus negative regulation of signal transduction regulation of response to stimulus regulation of cell communication negative regulation of cell population proliferation cell population proliferation regulation of cell population proliferation response to hormone response to endogenous stimulus response to peptide hormone response to insulin response to oxygen-containing compound response to nitrogen compound negative regulation of TORC1 signaling regulation of TORC1 signaling TORC1 signaling system process learning learning or memory nervous system process cognition associative learning activation of GTPase activity positive regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity cell cycle regulation of cell cycle	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium protein-containing complex intracellular anatomical structure TSC1-TSC2 complex cytoplasm cytosol membrane cell periphery cell cortex plasma membrane cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium protein-containing complex intracellular anatomical structure TSC1-TSC2 complex cytoplasm cytosol membrane cell periphery cell cortex plasma membrane protein folding chaperone complex intracellular protein-containing complex vacuolar membrane membrane-bounded organelle lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle lysosomal membrane organelle membrane lysosome postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization synapse cell junction asymmetric synapse perinuclear region of cytoplasm nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C], C [auth E], D [auth G]	IPR048720	PROPPIN	Family
A, B [auth C], C [auth E], D [auth G]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G]	IPR001680	WD40 repeat	Repeat
A, B [auth C], C [auth E], D [auth G]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
E [auth X], F [auth B], G [auth D], H [auth F], I [auth H]	IPR007483	Hamartin	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B [auth C], C [auth E], D [auth G]	: Q5MNZ6	intellectual disability epilepsy Mental deficiency ovarian cancer psoriasis plasma cell myeloma neurodevelopmental disorder with spastic quadriplegia and brain abnormalities with or without seizures
E [auth X], F [auth B], G [auth D], H [auth F], I [auth H]	: Q92574	tuberous sclerosis lung lymphangioleiomyomatosis squamous cell carcinoma renal cell carcinoma epilepsy progressive myoclonus epilepsy isolated focal cortical dysplasia type II tuberous sclerosis 1 Cognition Disorders dentatorubral-pallidoluysian atrophy West syndrome brain disease chromophobe renal cell carcinoma collecting duct carcinoma lymphangioleiomyomatosis tuberous sclerosis lung lymphangioleiomyomatosis squamous cell carcinoma renal cell carcinoma epilepsy progressive myoclonus epilepsy isolated focal cortical dysplasia type II tuberous sclerosis 1 Cognition Disorders dentatorubral-pallidoluysian atrophy West syndrome brain disease chromophobe renal cell carcinoma collecting duct carcinoma lymphangioleiomyomatosis developmental and epileptic encephalopathy sarcomatoid renal cell carcinoma visual epilepsy papillary renal cell carcinoma intellectual disability malignant ependymoma neoplasm angiomyolipoma urinary bladder neoplasm atypical teratoid rhabdoid tumor oral cavity neoplasm hepatocellular carcinoma large cell medulloblastoma malignant glioma action myoclonus-renal failure syndrome urinary bladder cancer ovarian cancer renal carcinoma bladder benign neoplasm glioblastoma cancer clear cell renal carcinoma Spasmus nutans Ehlers-Danlos syndrome adult hepatocellular carcinoma urinary bladder carcinoma autism benign urinary system neoplasm bladder carcinoma in situ cholangiocarcinoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.