9C4K | pdb_00009c4k

Yersinia entomophaga holotoxin complex in prepore conformation

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	PAL-like	8102242	3002726	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Effector protein SpvB, N-terminal domain-like	8102233	3002724	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Q	PCI	e9c4kQ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
P	PCI	e9c4kP1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
O	PCI	e9c4kO1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
L	PCI	e9c4kL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
I	PCI	e9c4kI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
F	PCI	e9c4kF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
C	Gasdermin_C	e9c4kC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Gasdermin_C	ECOD (v295.2)
N	PCI	e9c4kN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
K	PCI	e9c4kK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
H	PCI	e9c4kH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
E	PCI	e9c4kE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PCI	ECOD (v295.2)
B		e9c4kB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
B	Gasdermin_C	e9c4kB3	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Gasdermin_C	ECOD (v295.2)
A	7tm_1	e9c4kA2	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: 7tm_1	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
Q	Toxin subunit YenC2	-	-	cellular anatomical structure extracellular region
P	Toxin subunit YenB	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm extracellular region
C, F, I, L, O	Chitinase 2	chitin binding binding carbohydrate derivative binding chitinase activity hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity endochitinase activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process	cellular anatomical structure extracellular region
B, E, H, K, N	Toxin subunit YenA2	-	-	cellular anatomical structure extracellular region
A, D, G, J, M	Toxin subunit YenA1	-	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
Q	IPR050708	Type VI secretion system VgrG/RHS	Family
Q	IPR041508	Toxin complex C-like repeat	Repeat
Q	IPR022385	Rhs repeat-associated core	Domain
Q	IPR025968	YwqJ-like deaminase	Family
P	IPR028994	Integrin alpha, N-terminal	Homologous Superfamily
P	IPR003284	Salmonella virulence plasmid 65kDa B protein	Family
P	IPR022044	Insecticide toxin TcdB middle/C-terminal	Domain
P	IPR022045	Insecticide toxin TcdB middle/N-terminal	Domain
C, F, I, L, O	IPR011583	Chitinase II/V-like, catalytic domain	Domain
C, F, I, L, O	IPR029070	Chitinase insertion domain superfamily	Homologous Superfamily
C, F, I, L, O	IPR050314	Glycosyl hydrolase family 18	Family
C, F, I, L, O	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
C, F, I, L, O	IPR001223	Glycoside hydrolase family 18, catalytic domain	Domain
B, E, H, K, N	IPR041079	Neuraminidase-like domain	Domain
B, E, H, K, N	IPR040840	Tc toxin complex TcA, C-terminal TcB-binding domain	Domain
B, E, H, K, N	IPR046839	ABC toxin, N-terminal domain	Domain
A, D, G, J, M	IPR018003	Insecticidal toxin complex/plasmid virulence protein	Family