9BRC

Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
GSCOP2B SuperfamilyVacuolar ATP synthase subunit C8099588 3001744 SCOP2B (2021-05-27)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.Domain
A, B, C
PF22919C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)C-terminal domain of V and A type ATP synthaseThis entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases.Domain
A, B, C
PF16886ATPsynthase alpha/beta subunit N-term extension (ATP-synt_ab_Xtn)ATPsynthase alpha/beta subunit N-term extension- Family
A, B, C
PF01496V-type ATPase 116kDa subunit family (V_ATPase_I)V-type ATPase 116kDa subunit family- Family
A, B, C
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.Domain
A, B, C
PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].Domain
D, E, F
PF05493ATP synthase subunit H (ATP_synt_H)ATP synthase subunit H- Family
D, E, F
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.Domain
D, E, F
PF22919C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)C-terminal domain of V and A type ATP synthaseThis entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases.Domain
D, E, F
PF01992ATP synthase (C/AC39) subunit (vATP-synt_AC39)ATP synthase (C/AC39) subunit- Family
D, E, F
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.Domain
PF01813ATP synthase subunit D (ATP-synt_D)ATP synthase subunit D- Family
PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].Domain
I, J, K
PF01991ATP synthase (E/31 kDa) subunit (vATP-synt_E)ATP synthase (E/31 kDa) subunit- Family
I, J, K
PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].Domain
M, N, O
PF03179Vacuolar (H+)-ATPase G subunit (V-ATPase_G)Vacuolar (H+)-ATPase G subunit- Coiled-coil
M, N, O
PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].Domain
PF05827V-type proton ATPase subunit S1, luminal domain (VAS1_LD)V-type proton ATPase subunit S1, luminal domainThis entry represents the luminal domain (LD) found in eukaryotic V-type proton ATPase subunit S1 involved in V-ATPase V0 assembly, including Ac45 subunit (ATP6AP1) [1,2]. This domain folds as a globular beta-prism structure which is structurally sim ...This entry represents the luminal domain (LD) found in eukaryotic V-type proton ATPase subunit S1 involved in V-ATPase V0 assembly, including Ac45 subunit (ATP6AP1) [1,2]. This domain folds as a globular beta-prism structure which is structurally similar to LAMP1-3, thus, the LD domain of Ac45 is an evolutionarily conserved member of the LAMP family [2]. Ac45 is an ER membrane protein that guides the V-type ATPase into specialised subcellular compartments [3] and is critical for Vo complex assembly as it connects to multiple Vo subunits and phospholipids in the c-ring [2]. Missense mutations in the X-linked ATP6AP1 gene cause immunodeficiency in males that leads to recurrent bacterial infection, hepatopathy, cognitive impairment, and abnormal protein glycosylation [2].
Domain
PF20520V0 complex accessory subunit Ac45/VOA1 transmembrane domain (Ac45-VOA1_TM)V0 complex accessory subunit Ac45/VOA1 transmembrane domainThis entry represents the transmembrane domain from ER/Golgi membrane proteins including V0 complex accessory subunit Ac45 (ATP6AP1, also known as V-type proton ATPase subunit S1) from animals and the yeast homologue V0 assembly protein 1 (VOA1) whic ...This entry represents the transmembrane domain from ER/Golgi membrane proteins including V0 complex accessory subunit Ac45 (ATP6AP1, also known as V-type proton ATPase subunit S1) from animals and the yeast homologue V0 assembly protein 1 (VOA1) which are essential for V0 ATPase assembly, stability and function [1,2]. In humans, mutations of ATP6AP1 cause immunodeficiency with hypogammaglobulinemia, hepatopathy and neurocognitive abnormalities [3]. This entry also includes ER membrane BIG1 proteins from yeast, involved in cell wall biogenesis.
Domain
PF11698V-ATPase subunit H (V-ATPase_H_C)V-ATPase subunit H- Repeat
PF01284Membrane-associating domain (MARVEL)Membrane-associating domainMARVEL domain-containing proteins are often found in lipid-associating proteins - such as Occludin and MAL family proteins [1]. It may be part of the machinery of membrane apposition events, such as transport vesicle biogenesis.Domain
PF03223V-ATPase subunit C (V-ATPase_C)V-ATPase subunit C- Family
PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].Domain
PF01990ATP synthase (F/14-kDa) subunit (ATP-synt_F)ATP synthase (F/14-kDa) subunit- Family
PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
H(+)-transporting two-sector ATPase
D, E, F
V-type proton ATPase subunit B, brain isoform
ATPase H+-transporting V1 subunit D
I, J, K
V-type proton ATPase subunit E 1
M, N, O
V-type proton ATPase subunit G
V-type proton ATPase subunit S1
Q, R, S
Type IV secretion protein Dot- - -
V-type proton ATPase subunit H
Synaptophysin
V [auth a]V-type proton ATPase 116 kDa subunit a isoform 1
W [auth b]ATPase, H+ transporting, V0 subunit B (Predicted), isoform CRA_a -
X [auth d]V-type proton ATPase subunit
V-type proton ATPase 16 kDa proteolipid subunit c
JA [auth p]Renin receptor
Y [auth e]V-type proton ATPase subunit e 2
Z [auth f]Rnasek protein
V-type proton ATPase subunit C 1
V-type proton ATPase subunit F

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR022878V-type ATP synthase catalytic alpha chainFamily
A, B, C
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
A, B, C
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
A, B, C
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
A, B, C
IPR005725ATPase, V1 complex, subunit AFamily
A, B, C
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, C
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
A, B, C
IPR031686ATPsynthase alpha/beta subunit, N-terminal extensionDomain
A, B, C
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyHomologous Superfamily
A, B, C
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
D, E, F
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
D, E, F
IPR005723ATPase, V1 complex, subunit BFamily
D, E, F
IPR022879V-type ATP synthase regulatory subunit B/betaFamily
D, E, F
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
D, E, F
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
D, E, F
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR002699ATPase, V1 complex, subunit DFamily
I, J, K
IPR038495V-type ATPase subunit E, C-terminal domain superfamilyHomologous Superfamily
I, J, K
IPR002842V-type ATPase subunit EFamily
M, N, O
IPR005124Vacuolar (H+)-ATPase G subunitFamily
IPR046755V-type proton ATPase subunit S1, luminal domainDomain
IPR008388V0 complex accessory subunit Ac45Family
IPR046756V-type proton ATPase subunit S1/VOA1, transmembrane domainDomain
IPR004908ATPase, V1 complex, subunit HFamily
IPR016024Armadillo-type foldHomologous Superfamily
IPR011989Armadillo-like helicalHomologous Superfamily
IPR038497ATPase, V1 complex, subunit H, C-terminal domain superfamilyHomologous Superfamily
IPR011987ATPase, V1 complex, subunit H, C-terminalDomain
IPR001285Synaptophysin/synaptoporinFamily
IPR008253Marvel domainDomain
V [auth a]IPR026028ATPase, V0 complex, subunit 116kDa, eukaryoticFamily
V [auth a]IPR002490V-type ATPase, V0 complex, 116kDa subunit familyFamily
W [auth b]IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
W [auth b]IPR000245V-ATPase proteolipid subunitFamily
W [auth b]IPR002379V-ATPase proteolipid subunit C-like domainDomain
X [auth d]IPR036079V-type ATP synthase subunit c/d subunit superfamilyHomologous Superfamily
X [auth d]IPR035067V-type ATPase subunit C/dHomologous Superfamily
X [auth d]IPR044911V-type ATP synthase c/d subunit, domain 3 superfamilyHomologous Superfamily
X [auth d]IPR002843ATPase, V0 complex, c/d subunitFamily
X [auth d]IPR016727ATPase, V0 complex, subunit dFamily
IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
IPR002379V-ATPase proteolipid subunit C-like domainDomain
IPR011555V-ATPase proteolipid subunit C, eukaryoticFamily
IPR000245V-ATPase proteolipid subunitFamily
JA [auth p]IPR012493Renin receptor-likeFamily
Y [auth e]IPR017385ATPase, V0 complex, subunit e1/e2, metazoaFamily
Y [auth e]IPR008389ATPase, V0 complex, subunit e1/e2Family
Z [auth f]IPR026770Ribonuclease kappaFamily
IPR036132Vacuolar ATP synthase subunit C superfamilyHomologous Superfamily
IPR004907ATPase, V1 complex, subunit CFamily
IPR005772ATPase, V1 complex, subunit F, eukaryoticFamily
IPR036906ATPase, V1 complex, subunit F superfamilyHomologous Superfamily
IPR008218ATPase, V1 complex, subunit FFamily