Annotations: 8ZJW

Cryo-EM structure of photosynthetic LH1' complex of Roseospirillum parvum

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Y [auth h]	WD40	e8zjwh1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
W [auth f]	WD40	e8zjwf1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
U [auth d]	WD40	e8zjwd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
S [auth b]	WD40	e8zjwb1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
P [auth V]	WD40	e8zjwV1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
N [auth T]	WD40	e8zjwT1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
L [auth R]	WD40	e8zjwR1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
J [auth N]	WD40	e8zjwN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
H [auth J]	WD40	e8zjwJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
F [auth G]	WD40	e8zjwG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
D [auth E]	WD40	e8zjwE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
BA [auth C]	WD40	e8zjwC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B [auth A]	GFO_IDH_MocA	e8zjwA01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: GFO_IDH_MocA	ECOD (v294.2)
AA [auth j]	WD40	e8zjwj1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Z [auth i]	WD40	e8zjwi1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
X [auth g]	WD40	e8zjwg1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
V [auth e]	WD40	e8zjwe1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
T [auth c]	WD40	e8zjwc1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
R [auth a]	WD40	e8zjwa1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Q [auth Y]	WD40	e8zjwY1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
O [auth U]	WD40	e8zjwU1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
M [auth S]	WD40	e8zjwS1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
K [auth Q]	WD40	e8zjwQ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
I [auth K]	WD40	e8zjwK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
G [auth I]	WD40	e8zjwI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
E [auth F]	WD40	e8zjwF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C [auth D]	WD40	e8zjwD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
A [auth B]	GFO_IDH_MocA	e8zjwB01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: GFO_IDH_MocA	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], H [auth J], J [auth N], L [auth R], N [auth T], P [auth V], S [auth b], U [auth d], W [auth f], Y [auth h]	PF00556	Antenna complex alpha/beta subunit (LHC)	Antenna complex alpha/beta subunit		Domain
A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], K [auth Q], M [auth S], O [auth U], Q [auth Y], R [auth a], T [auth c], V [auth e], X [auth g], Z [auth i]	PF00556	Antenna complex alpha/beta subunit (LHC)	Antenna complex alpha/beta subunit		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], H [auth J], J [auth N], L [auth R], N [auth T], P [auth V], S [auth b], U [auth d], W [auth f], Y [auth h]	Alpha subunit of light-harvesting 1 complex	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle cytoplasm vesicle
A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], K [auth Q], M [auth S], O [auth U], Q [auth Y], R [auth a], T [auth c], V [auth e], X [auth g], Z [auth i]	Beta subunit of light-harvesting 1 complex	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], H [auth J], J [auth N], L [auth R], N [auth T], P [auth V], S [auth b], U [auth d], W [auth f], Y [auth h]	IPR000066	Antenna complex, alpha/beta subunit	Domain
AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], H [auth J], J [auth N], L [auth R], N [auth T], P [auth V], S [auth b], U [auth d], W [auth f], Y [auth h]	IPR018332	Antenna complex, alpha subunit	Family
AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], H [auth J], J [auth N], L [auth R], N [auth T], P [auth V], S [auth b], U [auth d], W [auth f], Y [auth h]	IPR002361	Antenna complex, alpha subunit conserved site	Conserved Site
AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], H [auth J], J [auth N], L [auth R], N [auth T], P [auth V], S [auth b], U [auth d], W [auth f], Y [auth h]	IPR035889	Light-harvesting complex	Homologous Superfamily
A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], K [auth Q], M [auth S], O [auth U], Q [auth Y], R [auth a], T [auth c], V [auth e], X [auth g], Z [auth i]	IPR000066	Antenna complex, alpha/beta subunit	Domain
A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], K [auth Q], M [auth S], O [auth U], Q [auth Y], R [auth a], T [auth c], V [auth e], X [auth g], Z [auth i]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], K [auth Q], M [auth S], O [auth U], Q [auth Y], R [auth a], T [auth c], V [auth e], X [auth g], Z [auth i]	IPR035889	Light-harvesting complex	Homologous Superfamily
A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], K [auth Q], M [auth S], O [auth U], Q [auth Y], R [auth a], T [auth c], V [auth e], X [auth g], Z [auth i]	IPR002362	Light-harvesting protein B beta chain	Family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth B], AA [auth j], B [auth A], BA [auth C], C [auth D] A [auth B], AA [auth j], B [auth A], BA [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth I], H [auth J], I [auth K], J [auth N], K [auth Q], L [auth R], M [auth S], N [auth T], O [auth U], P [auth V], Q [auth Y], R [auth a], S [auth b], T [auth c], U [auth d], V [auth e], W [auth f], X [auth g], Y [auth h], Z [auth i]	PDBTM	Annotated as membrane protein by PDBTM