8ZEE

Cryo-EM structure of an intermediate-state PSII-PRF2' complex during the process of photosystem II repair


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth E]SCOP2B SuperfamilyCytochrome b559 subunits8094631 3001602 SCOP2B (2021-05-27)
D [auth F]SCOP2B SuperfamilyCytochrome b559 subunits8093904 3001602 SCOP2B (2021-05-27)
F [auth I]SCOP2B SuperfamilyPhotosystem II reaction center protein I PsbI8094000 3001590 SCOP2B (2021-05-27)
G [auth K]SCOP2B SuperfamilyPhotosystem II reaction center protein K PsbK8093946 3001585 SCOP2B (2021-05-27)
I [auth M]SCOP2B SuperfamilyPhotosystem II reaction center protein M PsbM8094094 3001573 SCOP2B (2021-05-27)
O [auth A]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8094419 3000736 SCOP2B (2021-05-27)
M [auth Z]SCOP2B SuperfamilyPsbZ-like8094160 3001624 SCOP2B (2021-05-27)
N [auth C]SCOP2B SuperfamilyPhotosystem II antenna protein-like8094477 3001674 SCOP2B (2021-05-27)
B [auth D]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8094383 3000736 SCOP2B (2021-05-27)
E [auth H]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH8094651 3001547 SCOP2B (2021-05-27)
H [auth L]SCOP2B SuperfamilyPhotosystem II reaction center protein L PsbL8094509 3001523 SCOP2B (2021-05-27)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth E]PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
C [auth E]PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
F [auth I]PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
L [auth X]PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
O [auth A]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
J [auth T]PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T protein- Family
M [auth Z]PF01737YCF9 (Ycf9)YCF9- Family
N [auth C]PF00421Photosystem II protein (PSII)Photosystem II protein- Family
B [auth D]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
E [auth H]PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
H [auth L]PF02419PsbL protein (PsbL)PsbL protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B]Photosystem II CP47 reaction center protein
C [auth E]Cytochrome b559 subunit alpha
D [auth F]Cytochrome b559 subunit beta
F [auth I]Photosystem II reaction center protein I-
G [auth K]Photosystem II reaction center protein K-
I [auth M]Photosystem II reaction center protein M-
L [auth X]4.1 kDa photosystem II subunit-
O [auth A]Photosystem II protein D1
J [auth T]Photosystem II reaction center protein T-
K [auth V]Photosystem II reaction center protein Psb30-
M [auth Z]Photosystem II reaction center protein Z-
N [auth C]Photosystem II CP43 reaction center protein
P [auth 1]Chains: 1- - -
B [auth D]Photosystem II D2 protein
E [auth H]Photosystem II reaction center protein H
H [auth L]Photosystem II reaction center protein L-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B]IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
A [auth B]IPR000932Photosystem antenna protein-likeFamily
A [auth B]IPR017486Photosystem II CP47 reaction centre proteinFamily
C [auth E]IPR013081Photosystem II cytochrome b559, N-terminalDomain
C [auth E]IPR006217Photosystem II cytochrome b559, alpha subunitFamily
C [auth E]IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
C [auth E]IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
C [auth E]IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
D [auth F]IPR006241Photosystem II cytochrome b559, beta subunitFamily
D [auth F]IPR013081Photosystem II cytochrome b559, N-terminalDomain
D [auth F]IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
F [auth I]IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
F [auth I]IPR003686Photosystem II PsbIFamily
G [auth K]IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
G [auth K]IPR003687Photosystem II PsbKFamily
I [auth M]IPR007826Photosystem II PsbMFamily
I [auth M]IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
L [auth X]IPR009518Photosystem II PsbXFamily
O [auth A]IPR005867Photosystem II protein D1Family
O [auth A]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
O [auth A]IPR000484Photosynthetic reaction centre, L/MFamily
J [auth T]IPR001743Photosystem II PsbTFamily
J [auth T]IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
K [auth V]IPR010284Photosystem II reaction center protein Ycf12Family
M [auth Z]IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
M [auth Z]IPR002644Photosystem II PsbZ, reaction centreFamily
N [auth C]IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
N [auth C]IPR000932Photosystem antenna protein-likeFamily
N [auth C]IPR005869Photosystem II CP43 reaction centre proteinFamily
N [auth C]IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
B [auth D]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
B [auth D]IPR000484Photosynthetic reaction centre, L/MFamily
B [auth D]IPR005868Photosystem II D2 proteinFamily
E [auth H]IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
E [auth H]IPR001056Photosystem II reaction centre protein HFamily
H [auth L]IPR003372Photosystem II PsbLFamily
H [auth L]IPR037266Photosystem II PsbL superfamilyHomologous Superfamily