Cryo-EM structure of Cas8-HNH system at target free state
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I | WD40 | e8zdyI1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| H | WD40 | e8zdyH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| F | WD40 | e8zdyF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| E | WD40 | e8zdyE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| D | WD40 | e8zdyD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| C | WD40 | e8zdyC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| B | WD40 | e8zdyB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| A | WD40 | e8zdyA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF09618 | CRISPR-associated protein (Cas_Csy4) (Cas_Csy4) | CRISPR-associated protein (Cas_Csy4) | - | Family | |
| PF09614 | CRISPR-associated protein (Cas_Csy2) (Cas_Csy2) | CRISPR-associated protein (Cas_Csy2) | - | Family | |
| PF01844 | HNH endonuclease (HNH) | HNH endonuclease | - | Family | |
| PF09611 | CRISPR-associated protein (Cas_Csy1) (Cas_Csy1) | CRISPR-associated protein (Cas_Csy1) | - | Family | |
| PF09615 | CRISPR-associated protein (Cas_Csy3) (Cas_Csy3) | CRISPR-associated protein (Cas_Csy3) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| J [auth L] | RNA (58-MER) | - | - | - |
| a protein |
| - | ||
| a protein | - | - | - | |
| a protein | - | - | ||
| a protein | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR013396 | CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST | Family | |
| IPR042564 | CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST superfamily | Homologous Superfamily | |
| IPR013398 | Type I-F CRISPR-associated protein Csy2 | Family | |
| IPR013397 | Type I-F CRISPR-associated protein Csy1 | Family | |
| IPR003615 | HNH nuclease | Domain | |
| IPR002711 | HNH endonuclease | Domain | |
| IPR013399 | Type I-F CRISPR-associated protein Csy3 | Family |














