8Z5S | pdb_00008z5s

Cryo-EM structure of the proximal rod-export apparatus of the polar flagellar motor

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
VA [auth l]	PKD_channel	e8z5sl1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
UA [auth k]	PKD_channel	e8z5sk1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
TA [auth j]	PKD_channel	e8z5sj1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
SA [auth i]	PKD_channel	e8z5si1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
RA [auth h]	PKD_channel	e8z5sh1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
QA [auth g]	Flg_bb_rod,Flg_bbr_C	e8z5sg1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Flg_bb_rod,Flg_bbr_C	ECOD (v295.2)
PA [auth f]	PKD_channel	e8z5sf1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
OA [auth e]	PKD_channel	e8z5se1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
NA [auth d]	PKD_channel	e8z5sd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
MA [auth c]	Flg_bb_rod,Flg_bbr_C	e8z5sc1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Flg_bb_rod,Flg_bbr_C	ECOD (v295.2)
LA [auth b]	PKD_channel	e8z5sb1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
L [auth q]	PKD_channel	e8z5sq1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
K [auth p]	PKD_channel	e8z5sp1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
J [auth o]	PKD_channel	e8z5so1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
I [auth n]	PKD_channel	e8z5sn1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PKD_channel	ECOD (v295.2)
H [auth m]	Flg_bbr_C	e8z5sm1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Flg_bbr_C	ECOD (v295.2)
B [auth 2]	Flg_bb_rod,Flg_bbr_C	e8z5s21	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Flg_bb_rod,Flg_bbr_C	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
QA [auth g], RA [auth h], SA [auth i], TA [auth j], UA [auth k], QA [auth g], RA [auth h], SA [auth i], TA [auth j], UA [auth k], VA [auth l]	Flagellar basal-body rod protein FlgC	-	bacterial-type flagellum-dependent swarming motility bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	bacterial-type flagellum basal body cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum basal body, rod bacterial-type flagellum
LA [auth b], MA [auth c], NA [auth d], OA [auth e], PA [auth f]	Flagellar basal body rod protein FlgB	-	bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	bacterial-type flagellum basal body cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum basal body, rod bacterial-type flagellum
AA [auth AE], BA [auth AF], CA [auth AG], DA [auth AH], EA [auth AI], AA [auth AE], BA [auth AF], CA [auth AG], DA [auth AH], EA [auth AI], FA [auth AJ], GA [auth AK], HA [auth AL], IA [auth AM], JA [auth AN], KA [auth AO], W [auth AA], X [auth AB], Y [auth AC], Z [auth AD]	Flagellar M-ring protein	cytoskeletal motor activity	bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	cell periphery cellular anatomical structure plasma membrane membrane bacterial-type flagellum basal body cell projection bacterial-type flagellum basal body, MS ring organelle membraneless organelle bacterial-type flagellum
V [auth 8]	Flagellar biosynthetic protein FliR	-	organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly localization establishment of protein localization organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly localization establishment of protein localization protein targeting establishment of localization	cell periphery cellular anatomical structure plasma membrane membrane bacterial-type flagellum basal body cell projection organelle membraneless organelle bacterial-type flagellum
S [auth x]	Flagellar biosynthetic protein FlhB	-	organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly establishment of protein localization transport organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane
M [auth r], N [auth s], O [auth t], P [auth u], Q [auth v], M [auth r], N [auth s], O [auth t], P [auth u], Q [auth v], R [auth w]	Flagellar hook-basal body complex protein FliE	cytoskeletal motor activity structural molecule activity	bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	bacterial-type flagellum basal body cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum
H [auth m], I [auth n], J [auth o], K [auth p], L [auth q]	Flagellar basal-body rod protein FlgF	-	bacterial-type flagellum-dependent swarming motility bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	bacterial-type flagellum basal body cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum basal body, rod bacterial-type flagellum
D [auth 4], E [auth 5], F [auth 6], G [auth 7]	Flagellar biosynthetic protein FliQ	-	organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly establishment of protein localization transport organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane bacterial-type flagellum basal body cell projection organelle membraneless organelle bacterial-type flagellum
A [auth 1], B [auth 2], C [auth 3], T [auth y], U [auth z]	Flagellar biosynthetic protein FliP	-	cellular component organization bacterial-type flagellum organization organelle organization cell projection organization cellular process cellular component organization or biogenesis establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region cellular component organization bacterial-type flagellum organization organelle organization cell projection organization cellular process cellular component organization or biogenesis establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane bacterial-type flagellum basal body cell projection organelle membraneless organelle bacterial-type flagellum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
QA [auth g], RA [auth h], SA [auth i], TA [auth j], UA [auth k], QA [auth g], RA [auth h], SA [auth i], TA [auth j], UA [auth k], VA [auth l]	IPR019776	Flagellar basal body rod protein, conserved site	Conserved Site
QA [auth g], RA [auth h], SA [auth i], TA [auth j], UA [auth k], QA [auth g], RA [auth h], SA [auth i], TA [auth j], UA [auth k], VA [auth l]	IPR006299	Flagellar basal-body rod protein FlgC	Family
QA [auth g], RA [auth h], SA [auth i], TA [auth j], UA [auth k], QA [auth g], RA [auth h], SA [auth i], TA [auth j], UA [auth k], VA [auth l]	IPR010930	Flagellar basal-body/hook protein, C-terminal domain	Domain
QA [auth g], RA [auth h], SA [auth i], TA [auth j], UA [auth k], QA [auth g], RA [auth h], SA [auth i], TA [auth j], UA [auth k], VA [auth l]	IPR001444	Flagellar basal body rod protein, N-terminal	Domain
LA [auth b], MA [auth c], NA [auth d], OA [auth e], PA [auth f]	IPR006300	Flagellar basal-body rod protein FlgB	Family
AA [auth AE], BA [auth AF], CA [auth AG], DA [auth AH], EA [auth AI], AA [auth AE], BA [auth AF], CA [auth AG], DA [auth AH], EA [auth AI], FA [auth AJ], GA [auth AK], HA [auth AL], IA [auth AM], JA [auth AN], KA [auth AO], W [auth AA], X [auth AB], Y [auth AC], Z [auth AD]	IPR006182	Flagellar M-ring, N-terminal	Domain
AA [auth AE], BA [auth AF], CA [auth AG], DA [auth AH], EA [auth AI], AA [auth AE], BA [auth AF], CA [auth AG], DA [auth AH], EA [auth AI], FA [auth AJ], GA [auth AK], HA [auth AL], IA [auth AM], JA [auth AN], KA [auth AO], W [auth AA], X [auth AB], Y [auth AC], Z [auth AD]	IPR045851	AMP-binding enzyme domain superfamily	Homologous Superfamily
AA [auth AE], BA [auth AF], CA [auth AG], DA [auth AH], EA [auth AI], AA [auth AE], BA [auth AF], CA [auth AG], DA [auth AH], EA [auth AI], FA [auth AJ], GA [auth AK], HA [auth AL], IA [auth AM], JA [auth AN], KA [auth AO], W [auth AA], X [auth AB], Y [auth AC], Z [auth AD]	IPR013556	Flagellar M-ring C-terminal	Domain
AA [auth AE], BA [auth AF], CA [auth AG], DA [auth AH], EA [auth AI], AA [auth AE], BA [auth AF], CA [auth AG], DA [auth AH], EA [auth AI], FA [auth AJ], GA [auth AK], HA [auth AL], IA [auth AM], JA [auth AN], KA [auth AO], W [auth AA], X [auth AB], Y [auth AC], Z [auth AD]	IPR043427	Lipoprotein YscJ/Flagellar M-ring protein	Family
AA [auth AE], BA [auth AF], CA [auth AG], DA [auth AH], EA [auth AI], AA [auth AE], BA [auth AF], CA [auth AG], DA [auth AH], EA [auth AI], FA [auth AJ], GA [auth AK], HA [auth AL], IA [auth AM], JA [auth AN], KA [auth AO], W [auth AA], X [auth AB], Y [auth AC], Z [auth AD]	IPR000067	Flagellar M-ring protein FliF	Family
AA [auth AE], BA [auth AF], CA [auth AG], DA [auth AH], EA [auth AI], AA [auth AE], BA [auth AF], CA [auth AG], DA [auth AH], EA [auth AI], FA [auth AJ], GA [auth AK], HA [auth AL], IA [auth AM], JA [auth AN], KA [auth AO], W [auth AA], X [auth AB], Y [auth AC], Z [auth AD]	IPR063443	FliF, N-terminal domain	Domain
V [auth 8]	IPR002010	Type III secretion system inner membrane R protein	Family
V [auth 8]	IPR006303	Flagellar biosynthesis protein FliR	Family
S [auth x]	IPR006136	Flagellar biosynthetic protein FlhB	Family
S [auth x]	IPR006135	Type III secretion system substrate exporter	Family
S [auth x]	IPR029025	Type III secretion system substrate exporter, C-terminal	Homologous Superfamily
M [auth r], N [auth s], O [auth t], P [auth u], Q [auth v], M [auth r], N [auth s], O [auth t], P [auth u], Q [auth v], R [auth w]	IPR001624	Flagellar hook-basal body complex protein FliE	Family
H [auth m], I [auth n], J [auth o], K [auth p], L [auth q]	IPR020013	Flagellar hook-basal body protein, FlgE/F/G	Family
H [auth m], I [auth n], J [auth o], K [auth p], L [auth q]	IPR012836	Flagellar basal-body rod FlgF	Family
H [auth m], I [auth n], J [auth o], K [auth p], L [auth q]	IPR010930	Flagellar basal-body/hook protein, C-terminal domain	Domain
H [auth m], I [auth n], J [auth o], K [auth p], L [auth q]	IPR053967	Flagellar hook protein FlgE/F/G-like, D1 domain	Domain
H [auth m], I [auth n], J [auth o], K [auth p], L [auth q]	IPR001444	Flagellar basal body rod protein, N-terminal	Domain
H [auth m], I [auth n], J [auth o], K [auth p], L [auth q]	IPR037925	Flagellar hook-basal body protein, FlgE/F/G-like	Homologous Superfamily
D [auth 4], E [auth 5], F [auth 6], G [auth 7]	IPR006305	Flagellar biosynthesis protein FliQ	Family
D [auth 4], E [auth 5], F [auth 6], G [auth 7]	IPR002191	Bacterial export protein family 3	Family
A [auth 1], B [auth 2], C [auth 3], T [auth y], U [auth z]	IPR005838	Type III secretion system inner membrane P protein	Family
A [auth 1], B [auth 2], C [auth 3], T [auth y], U [auth z]	IPR005837	Flagellar transport protein FliP	Family