Annotations: 8Z5E

Crystal structure of beta-ketoacyl-ACP synthase FabF K336A in complex with octanoyl-ACP from Helicobacter pylori

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	ACP-like	8099578	3001805	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ACP-like	8099578	3001805	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PabTrmU54_TRAM_dom	e8z5eA01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PabTrmU54_TRAM_dom	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F	Acyl carrier protein	phosphopantetheine-dependent carrier activity prosthetic group binding binding acyl carrier activity molecular carrier activity ACP phosphopantetheine attachment site binding acyl binding small molecule binding vitamin binding modified amino acid binding ion binding anion binding phosphopantetheine binding sulfur compound binding	oxoacid metabolic process glycolipid metabolic process carbohydrate derivative metabolic process lipid biosynthetic process organic acid metabolic process organic acid biosynthetic process carboxylic acid biosynthetic process phospholipid metabolic process phosphate-containing compound metabolic process lipooligosaccharide biosynthetic process small molecule metabolic process phosphorus metabolic process dicarboxylic acid biosynthetic process carbohydrate derivative biosynthetic process oxoacid metabolic process glycolipid metabolic process carbohydrate derivative metabolic process lipid biosynthetic process organic acid metabolic process organic acid biosynthetic process carboxylic acid biosynthetic process phospholipid metabolic process phosphate-containing compound metabolic process lipooligosaccharide biosynthetic process small molecule metabolic process phosphorus metabolic process dicarboxylic acid biosynthetic process carbohydrate derivative biosynthetic process lipooligosaccharide metabolic process small molecule biosynthetic process liposaccharide metabolic process dicarboxylic acid metabolic process carboxylic acid metabolic process fatty acid derivative biosynthetic process primary metabolic process glycolipid biosynthetic process phospholipid biosynthetic process fatty acid derivative metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process Kdo2-lipid A biosynthetic process metabolic process cellular process lipid metabolic process lipid A biosynthetic process lipid A metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane
A, B, D, E	3-oxoacyl-[acyl-carrier-protein] synthase 2	acyltransferase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity catalytic activity	fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F	IPR006162	Phosphopantetheine attachment site	PTM
C, F	IPR009081	Phosphopantetheine binding ACP domain	Domain
C, F	IPR020806	Polyketide synthase-like, phosphopantetheine-binding domain	Domain
C, F	IPR036736	ACP-like superfamily	Homologous Superfamily
C, F	IPR003231	Acyl carrier protein	Family
A, B, D, E	IPR014031	Beta-ketoacyl synthase, C-terminal domain	Domain
A, B, D, E	IPR016039	Thiolase-like	Homologous Superfamily
A, B, D, E	IPR000794	Beta-ketoacyl synthase	Family
A, B, D, E	IPR020841	Polyketide synthase, beta-ketoacyl synthase domain	Domain
A, B, D, E	IPR014030	Beta-ketoacyl synthase-like, N-terminal domain	Domain
A, B, D, E	IPR017568	3-oxoacyl-[acyl-carrier-protein] synthase 2	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8Z5E | pdb_00008z5e

Crystal structure of beta-ketoacyl-ACP synthase FabF K336A in complex with octanoyl-ACP from Helicobacter pylori

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage