Annotations: 8Z22

Crystal structure of the liprin-alpha2/RIM1 complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e8z22B1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
A	PabTrmU54_TRAM_dom	e8z22A01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: PabTrmU54_TRAM_dom	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Regulating synaptic membrane exocytosis 1	small GTPase binding protein binding binding enzyme binding GTPase binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	localization transport neurotransmitter transport establishment of localization cellular localization establishment of protein localization intracellular transport protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport secretion by cell localization transport neurotransmitter transport establishment of localization cellular localization establishment of protein localization intracellular transport protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport secretion by cell exocytosis secretion export from cell vesicle-mediated transport	cellular anatomical structure membrane synapse cell junction
C, D	Liprin-alpha-2	structural constituent of postsynapse structural molecule activity structural constituent of postsynaptic density structural constituent of synapse structural constituent of postsynaptic specialization structural constituent of presynapse	cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process vesicle cytoskeletal trafficking vesicle localization establishment of organelle localization cellular localization dense core granule transport transport establishment of vesicle localization intracellular transport dense core granule cytoskeletal transport establishment of localization cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process vesicle cytoskeletal trafficking vesicle localization establishment of organelle localization cellular localization dense core granule transport transport establishment of vesicle localization intracellular transport dense core granule cytoskeletal transport establishment of localization localization dense core granule localization organelle localization cytosolic transport establishment of localization in cell secretory granule localization cytoskeleton-dependent intracellular transport multicellular organismal process regulation of cellular process cell projection organization neuron projection development multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development regulation of synapse structure or activity synapse organization regulation of biological quality dendritic spine morphogenesis system development developmental process dendritic spine development regulation of biological process postsynapse organization dendritic spine organization regulation of cell projection organization regulation of postsynapse organization nervous system development generation of neurons regulation of neuron projection development regulation of cellular component organization cellular developmental process regulation of developmental process plasma membrane bounded cell projection morphogenesis cell development cell morphogenesis cellular component organization neurogenesis dendrite development cellular component organization or biogenesis regulation of anatomical structure morphogenesis plasma membrane bounded cell projection organization biological regulation dendrite morphogenesis cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis regulation of synapse organization cell junction organization neuron development regulation of dendritic spine morphogenesis neuron projection organization animal gross anatomical part developmental process regulation of plasma membrane bounded cell projection organization regulation of dendritic spine development regulation of localization regulated exocytosis modulation of chemical synaptic transmission signaling synaptic vesicle cycle synaptic vesicle exocytosis vesicle-mediated transport cell communication vesicle-mediated transport in synapse regulation of regulated secretory pathway synaptic signaling regulation of secretion by cell secretion by cell signal release trans-synaptic signaling regulation of signaling neurotransmitter secretion regulation of transport secretion regulation of neurotransmitter transport regulation of synaptic vesicle exocytosis export from cell cell-cell signaling neurotransmitter transport regulation of vesicle-mediated transport regulation of secretion chemical synaptic transmission signal release from synapse regulation of trans-synaptic signaling exocytosis regulation of neurotransmitter secretion anterograde trans-synaptic signaling regulation of exocytosis regulation of cell communication	presynapse cellular anatomical structure synapse cell junction presynaptic active zone extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle cell surface presynapse cellular anatomical structure synapse cell junction presynaptic active zone extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle cell surface intracellular anatomical structure cytoplasm cytosol cell periphery membrane plasma membrane presynaptic membrane plasma membrane region synaptic membrane glutamatergic synapse neuron spine neuron projection dendritic spine plasma membrane bounded cell projection somatodendritic compartment cell projection postsynapse dendrite dendritic tree postsynaptic density neuron to neuron synapse postsynaptic specialization asymmetric synapse axon transport vesicle intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle synaptic vesicle secretory vesicle exocytic vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR054386	RIM, zinc finger	Domain
A, B	IPR017455	Zinc finger, FYVE-related	Domain
A, B	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A, B	IPR036034	PDZ superfamily	Homologous Superfamily
A, B	IPR039032	Rim-like	Family
A, B	IPR000008	C2 domain	Domain
A, B	IPR010911	Rab-binding domain	Domain
A, B	IPR035892	C2 domain superfamily	Homologous Superfamily
A, B	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
A, B	IPR001478	PDZ domain	Domain
C, D	IPR037620	Liprin-alpha, SAM domain 1	Domain
C, D	IPR029515	Liprin	Family
C, D	IPR057892	Liprin-alpha, CC2 domain	Domain
C, D	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
C, D	IPR037622	Liprin-alpha, SAM domain 3	Domain
C, D	IPR001660	Sterile alpha motif domain	Domain
C, D	IPR037621	Liprin-alpha, SAM domain 2	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, D	: O75334	astrocytic tumor large cell medulloblastoma medulloblastoma Pick disease primitive neuroectodermal tumor atypical teratoid rhabdoid tumor malignant ependymoma oligodendroglioma pilocytic astrocytoma glioblastoma malignant glioma ovarian cancer pituitary cancer

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8Z22 | pdb_00008z22

Crystal structure of the liprin-alpha2/RIM1 complex

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation