X-ray structure of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | WD40 | e8yxkB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| A | Lip_C | e8yxkA01 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Lip_C | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF01832 | Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (Glucosaminidase) | Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase | This family includes Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EC:3.2.1.96. As well as the flageller protein J Swiss:P75942 that has been shown to hydrolyse peptidoglycan [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Phage cell wall hydrolase | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR000064 | Endopeptidase, NLPC/P60 domain | Domain | |
| IPR056937 | YqbQ/XkdQ | Domain | |
| IPR038765 | Papain-like cysteine peptidase superfamily | Homologous Superfamily | |
| IPR002901 | Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain | Domain | |
| IPR051202 | Peptidase C40 | Family |














