Annotations: 8YM6

Structure of Caspase-8/cFLIP death effector domain assembly

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E [auth H]	Pyr_redox_2	e8ym6H01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Pyr_redox_2	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth C], B, C [auth A], D	PF01335	Death effector domain (DED)	Death effector domain		Domain
E [auth H], F [auth G], G [auth F], H [auth K], I, E [auth H], F [auth G], G [auth F], H [auth K], I, J, K [auth M], L [auth O], M [auth N]	PF01335	Death effector domain (DED)	Death effector domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], B, C [auth A], D	Caspase-8 subunit p10	cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity protein-containing complex binding binding protein binding signaling receptor binding cytokine receptor binding tumor necrosis factor receptor superfamily binding death receptor binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity protein-containing complex binding binding protein binding signaling receptor binding cytokine receptor binding tumor necrosis factor receptor superfamily binding death receptor binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding identical protein binding cysteine-type endopeptidase activity endopeptidase activity scaffold protein binding death effector domain binding protein domain specific binding tumor necrosis factor receptor binding	developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development cell differentiation involved in embryonic placenta development cellular developmental process placenta development reproductive process syncytiotrophoblast cell differentiation involved in labyrinthine layer development chordate embryonic development developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development cell differentiation involved in embryonic placenta development cellular developmental process placenta development reproductive process syncytiotrophoblast cell differentiation involved in labyrinthine layer development chordate embryonic development labyrinthine layer development developmental process involved in reproduction embryo development in utero embryonic development embryonic placenta development embryo development ending in birth or egg hatching cell differentiation cellular process embryonic organ development apoptotic process cell death programmed cell death regulation of biological process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death positive regulation of apoptotic process positive regulation of cellular process immune system process B cell activation cell activation lymphocyte activation leukocyte activation neuron apoptotic process positive regulation of neuron apoptotic process regulation of neuron apoptotic process cellular response to stimulus response to stimulus cell surface receptor signaling pathway signaling extrinsic apoptotic signaling pathway cell communication apoptotic signaling pathway signal transduction regulation of execution phase of apoptosis positive regulation of execution phase of apoptosis execution phase of apoptosis response to chemical response to anesthetic extrinsic apoptotic signaling pathway via death domain receptors interleukin-1 production regulation of interleukin-1 beta production positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of interleukin-1 beta production positive regulation of biosynthetic process regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of interleukin-1 production positive regulation of macromolecule metabolic process regulation of biosynthetic process regulation of interleukin-1 production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process interleukin-1 beta production positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process positive regulation of protein metabolic process regulation of protein metabolic process primary metabolic process regulation of primary metabolic process regulation of proteolysis proteolysis positive regulation of proteolysis protein metabolic process natural killer cell activation myeloid leukocyte differentiation regulation of leukocyte differentiation regulation of developmental process cell development regulation of cell differentiation mononuclear cell differentiation regulation of cell development positive regulation of developmental process positive regulation of cell differentiation positive regulation of hemopoiesis regulation of immune system process regulation of macrophage differentiation positive regulation of immune system process regulation of multicellular organismal development hemopoiesis regulation of myeloid cell differentiation positive regulation of cell development macrophage differentiation regulation of myeloid leukocyte differentiation positive regulation of myeloid leukocyte differentiation positive regulation of macrophage differentiation myeloid cell differentiation positive regulation of myeloid cell differentiation regulation of hemopoiesis positive regulation of leukocyte differentiation leukocyte differentiation response to cytokine regulation of signal transduction cytokine-mediated signaling pathway cellular response to tumor necrosis factor tumor necrosis factor-mediated signaling pathway cellular response to cytokine stimulus regulation of signaling regulation of tumor necrosis factor-mediated signaling pathway regulation of cytokine-mediated signaling pathway response to peptide regulation of response to cytokine stimulus regulation of response to stimulus regulation of cell communication response to tumor necrosis factor self proteolysis positive regulation of cell communication positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction intracellular signal transduction positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of canonical NF-kappaB signal transduction positive regulation of signaling blood vessel morphogenesis tube development angiogenesis vasculature development anatomical structure morphogenesis tube morphogenesis anatomical structure formation involved in morphogenesis blood vessel development negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process negative regulation of canonical NF-kappaB signal transduction negative regulation of cell communication negative regulation of cellular process negative regulation of response to stimulus negative regulation of signal transduction protein maturation protein processing response to alcohol response to oxygen-containing compound response to ethanol necroptotic process negative regulation of programmed cell death negative regulation of necroptotic process programmed necrotic cell death regulation of necroptotic process negative regulation of programmed necrotic cell death regulation of programmed necrotic cell death T cell activation regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus response to biotic stimulus response to stress regulation of response to stress innate immune response response to external biotic stimulus immune response response to other organism defense response regulation of innate immune response defense response to symbiont response to external stimulus defense response to other organism regulation of immune response response to mechanical stimulus response to abiotic stimulus cellular response to mechanical stimulus cellular response to abiotic stimulus cellular response to external stimulus cellular response to environmental stimulus positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion TRAIL-activated apoptotic signaling pathway pyroptotic inflammatory response inflammatory response response to cobalt ion response to metal ion response to lipid response to lipopolysaccharide response to bacterium response to molecule of bacterial origin response to estradiol	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium intracellular anatomical structure cytoplasm cytosol intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle membrane-bounded organelle cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium intracellular anatomical structure cytoplasm cytosol intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle membrane-bounded organelle mitochondrial membrane mitochondrion membrane organelle outer membrane intracellular membrane-bounded organelle organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane cell body cell periphery protein-containing complex plasma membrane protein complex plasma membrane death-inducing signaling complex membrane protein complex CD95 death-inducing signaling complex ripoptosome catalytic complex nucleus
E [auth H], F [auth G], G [auth F], H [auth K], I, E [auth H], F [auth G], G [auth F], H [auth K], I, J, K [auth M], L [auth O], M [auth N]	CASP8 and FADD-like apoptosis regulator subunit p43	cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity catalytic activity endopeptidase activity protein binding binding enzyme binding protease binding enzyme regulator activity enzyme activator activity molecular function activator activity cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity catalytic activity endopeptidase activity protein binding binding enzyme binding protease binding enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity protein-containing complex binding signaling receptor binding cytokine receptor binding tumor necrosis factor receptor superfamily binding death receptor binding	regulation of biological process cellular response to growth factor stimulus response to stimulus negative regulation of response to stimulus regulation of cellular response to transforming growth factor beta stimulus cellular response to transforming growth factor beta stimulus response to endogenous stimulus regulation of cellular response to growth factor stimulus biological regulation negative regulation of biological process negative regulation of cellular response to growth factor stimulus negative regulation of cellular response to transforming growth factor beta stimulus cellular response to endogenous stimulus response to transforming growth factor beta regulation of response to stimulus regulation of biological process cellular response to growth factor stimulus response to stimulus negative regulation of response to stimulus regulation of cellular response to transforming growth factor beta stimulus cellular response to transforming growth factor beta stimulus response to endogenous stimulus regulation of cellular response to growth factor stimulus biological regulation negative regulation of biological process negative regulation of cellular response to growth factor stimulus negative regulation of cellular response to transforming growth factor beta stimulus cellular response to endogenous stimulus response to transforming growth factor beta regulation of response to stimulus response to growth factor cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of signaling positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of cell communication regulation of canonical NF-kappaB signal transduction cellular process positive regulation of signaling positive regulation of ERK1 and ERK2 cascade positive regulation of MAPK cascade regulation of MAPK cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade multicellular organismal process connective tissue development positive regulation of cell population proliferation renal system development kidney vasculature development multicellular organism development renal system vasculature development positive regulation of glomerular mesangial cell proliferation regulation of glomerular mesangial cell proliferation anatomical structure development nephron development system development blood vessel development positive regulation of cell proliferation involved in kidney development developmental process cell population proliferation animal organ development cell proliferation involved in kidney development glomerular mesangium development tissue development vasculature development circulatory system development glomerulus development regulation of cell population proliferation glomerular mesangial cell proliferation glomerulus vasculature development kidney development negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death response to ketone response to lipid response to chemical response to oxygen-containing compound response to testosterone response to decreased oxygen levels cellular response to oxygen levels cellular response to hypoxia cellular response to decreased oxygen levels cellular response to chemical stimulus cellular response to stress response to hypoxia response to stress response to oxygen levels response to abiotic stimulus extrinsic apoptotic signaling pathway via death domain receptors negative regulation of signaling extrinsic apoptotic signaling pathway negative regulation of cell communication negative regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway cell surface receptor signaling pathway negative regulation of extrinsic apoptotic signaling pathway via death domain receptors negative regulation of signal transduction regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway regulation of extrinsic apoptotic signaling pathway via death domain receptors regulation of apoptotic signaling pathway reactive oxygen species biosynthetic process regulation of biosynthetic process negative regulation of metabolic process reactive oxygen species metabolic process regulation of reactive oxygen species biosynthetic process negative regulation of reactive oxygen species metabolic process biosynthetic process negative regulation of reactive oxygen species biosynthetic process negative regulation of biosynthetic process metabolic process regulation of metabolic process regulation of reactive oxygen species metabolic process muscle atrophy system process striated muscle adaptation skeletal muscle atrophy muscle adaptation skeletal muscle adaptation muscle system process striated muscle atrophy neuron apoptotic process positive regulation of programmed cell death positive regulation of apoptotic process positive regulation of neuron apoptotic process regulation of neuron apoptotic process muscle structure development skeletal muscle organ development skeletal muscle tissue development muscle tissue development muscle organ development striated muscle tissue development negative regulation of hepatocyte apoptotic process regulation of epithelial cell apoptotic process epithelial cell apoptotic process regulation of hepatocyte apoptotic process negative regulation of epithelial cell apoptotic process hepatocyte apoptotic process response to hormone response to steroid hormone cellular response to ketone cellular response to steroid hormone stimulus cellular response to hormone stimulus cellular response to dexamethasone stimulus response to glucocorticoid cellular response to glucocorticoid stimulus cellular response to oxygen-containing compound cellular response to corticosteroid stimulus response to corticosteroid cellular response to lipid response to dexamethasone regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization cellular developmental process cell projection organization cell development neuron projection development cellular component organization neurogenesis neuron differentiation positive regulation of neuron projection development cell differentiation positive regulation of cell projection organization cellular component organization or biogenesis plasma membrane bounded cell projection organization regulation of cell projection organization nervous system development generation of neurons neuron development regulation of plasma membrane bounded cell projection organization regulation of syncytium formation by plasma membrane fusion cell-cell fusion negative regulation of syncytium formation by plasma membrane fusion muscle cell differentiation myotube differentiation negative regulation of cellular component organization myoblast fusion syncytium formation by cell-cell fusion regulation of myoblast fusion negative regulation of myoblast fusion striated muscle cell differentiation regulation of hepatocyte proliferation positive regulation of epithelial cell proliferation hepatocyte proliferation positive regulation of hepatocyte proliferation regulation of epithelial cell proliferation epithelial cell proliferation myeloid leukocyte differentiation hemopoiesis macrophage differentiation mononuclear cell differentiation myeloid cell differentiation leukocyte differentiation skeletal muscle satellite cell proliferation muscle cell proliferation regulation of skeletal muscle satellite cell proliferation skeletal muscle cell proliferation regulation of skeletal muscle cell proliferation striated muscle cell proliferation necroptotic process programmed necrotic cell death regulation of necroptotic process regulation of programmed necrotic cell death tissue regeneration skeletal muscle tissue regeneration developmental growth growth regeneration negative regulation of cardiac muscle cell apoptotic process muscle cell apoptotic process regulation of cardiac muscle cell apoptotic process regulation of muscle cell apoptotic process cardiac muscle cell apoptotic process regulation of striated muscle cell apoptotic process striated muscle cell apoptotic process negative regulation of muscle cell apoptotic process negative regulation of striated muscle cell apoptotic process response to estradiol cellular response to estradiol stimulus cellular component assembly involved in morphogenesis skeletal myofibril assembly membraneless organelle assembly cellular component biogenesis striated muscle cell development cellular anatomical entity morphogenesis cellular component assembly muscle cell development actin filament-based process actomyosin structure organization actin cytoskeleton organization organelle assembly anatomical structure morphogenesis myofibril assembly organelle organization anatomical structure formation involved in morphogenesis supramolecular fiber organization cytoskeleton organization cellular response to nitrogen compound response to peptide hormone cellular response to peptide hormone stimulus response to nitrogen compound response to insulin cellular response to insulin stimulus cellular response to epidermal growth factor stimulus response to epidermal growth factor proteolysis primary metabolic process protein metabolic process macromolecule metabolic process positive regulation of extracellular matrix organization extracellular matrix organization regulation of extracellular matrix organization extracellular structure organization external encapsulating structure organization cellular response to nitric oxide response to nitric oxide cellular response to reactive nitrogen species	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery protein-containing complex plasma membrane protein complex membrane plasma membrane death-inducing signaling complex membrane protein complex CD95 death-inducing signaling complex ripoptosome catalytic complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B, C [auth A], D	IPR029030	Caspase-like domain superfamily	Homologous Superfamily
A [auth C], B, C [auth A], D	IPR001875	Death effector domain	Domain
A [auth C], B, C [auth A], D	IPR001309	Peptidase C14, p20 domain	Domain
A [auth C], B, C [auth A], D	IPR011600	Peptidase C14, caspase domain	Domain
A [auth C], B, C [auth A], D	IPR016129	Peptidase family C14A, His active site	Active Site
A [auth C], B, C [auth A], D	IPR033170	Caspase-8, death effector domain 1	Domain
A [auth C], B, C [auth A], D	IPR015917	Peptidase C14A, caspase catalytic domain	Domain
A [auth C], B, C [auth A], D	IPR011029	Death-like domain superfamily	Homologous Superfamily
A [auth C], B, C [auth A], D	IPR033139	Peptidase family C14A, cysteine active site	Active Site
A [auth C], B, C [auth A], D	IPR002138	Peptidase C14, caspase non-catalytic subunit p10	Domain
E [auth H], F [auth G], G [auth F], H [auth K], I, E [auth H], F [auth G], G [auth F], H [auth K], I, J, K [auth M], L [auth O], M [auth N]	IPR001309	Peptidase C14, p20 domain	Domain
E [auth H], F [auth G], G [auth F], H [auth K], I, E [auth H], F [auth G], G [auth F], H [auth K], I, J, K [auth M], L [auth O], M [auth N]	IPR011600	Peptidase C14, caspase domain	Domain
E [auth H], F [auth G], G [auth F], H [auth K], I, E [auth H], F [auth G], G [auth F], H [auth K], I, J, K [auth M], L [auth O], M [auth N]	IPR015917	Peptidase C14A, caspase catalytic domain	Domain
E [auth H], F [auth G], G [auth F], H [auth K], I, E [auth H], F [auth G], G [auth F], H [auth K], I, J, K [auth M], L [auth O], M [auth N]	IPR011029	Death-like domain superfamily	Homologous Superfamily
E [auth H], F [auth G], G [auth F], H [auth K], I, E [auth H], F [auth G], G [auth F], H [auth K], I, J, K [auth M], L [auth O], M [auth N]	IPR029030	Caspase-like domain superfamily	Homologous Superfamily
E [auth H], F [auth G], G [auth F], H [auth K], I, E [auth H], F [auth G], G [auth F], H [auth K], I, J, K [auth M], L [auth O], M [auth N]	IPR001875	Death effector domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth C], B, C [auth A], D	: Q14790	melanoma non-small cell lung carcinoma breast carcinoma status epilepticus autoimmune lymphoproliferative syndrome type 2B type 2 diabetes mellitus esophageal cancer autoimmune lymphoproliferative syndrome skin neoplasm tubular adenocarcinoma Edema adenocarcinoma gastric cancer lung cancer colorectal cancer melanoma non-small cell lung carcinoma breast carcinoma status epilepticus autoimmune lymphoproliferative syndrome type 2B type 2 diabetes mellitus esophageal cancer autoimmune lymphoproliferative syndrome skin neoplasm tubular adenocarcinoma Edema adenocarcinoma gastric cancer lung cancer colorectal cancer cutaneous melanoma allergic contact dermatitis granular cell carcinoma hepatocellular carcinoma B-cell chronic lymphocytic leukemia breast cancer cervical cancer skin cancer contact dermatitis head and neck squamous cell carcinoma ischemia reperfusion injury childhood acute lymphoblastic leukemia lung disease Sjogren syndrome malignant ependymoma cutaneous lupus erythematosus adult hepatocellular carcinoma osteosarcoma atypical teratoid rhabdoid tumor hematologic disease human papilloma virus infection breast adenocarcinoma prostate carcinoma breast disease rheumatoid arthritis skin basal cell carcinoma malignant glioma squamous cell carcinoma cribriform carcinoma maturity-onset diabetes of the young neoplasm of esophagus gastric neoplasm ovarian cancer intracerebral hemorrhage psoriasis cancer lung carcinoma colorectal carcinoma lymphatic system disease cribriform carcinoma of breast subependymal giant cell astrocytoma esophageal squamous cell carcinoma glioblastoma oral cavity squamous cell carcinoma pancreatic intraductal papillary-mucinous neoplasm hereditary diffuse gastric adenocarcinoma pilocytic astrocytoma bipolar disorder lung benign neoplasm carcinoma of esophagus
E [auth H], F [auth G], G [auth F], H [auth K], I, E [auth H], F [auth G], G [auth F], H [auth K], I, J, K [auth M], L [auth O], M [auth N]	: O15519	myelodysplastic syndrome Lymphoma, Extranodal NK-T-Cell Hodgkins lymphoma leukemia non-small cell lung carcinoma spina bifida interstitial cystitis lung cancer adenoma amyotrophic lateral sclerosis breast cancer nodular lymphocyte predominant Hodgkin lymphoma ovarian cancer dermatomyositis pancreatic neoplasm myelodysplastic syndrome Lymphoma, Extranodal NK-T-Cell Hodgkins lymphoma leukemia non-small cell lung carcinoma spina bifida interstitial cystitis lung cancer adenoma amyotrophic lateral sclerosis breast cancer nodular lymphocyte predominant Hodgkin lymphoma ovarian cancer dermatomyositis pancreatic neoplasm glioblastoma prostate carcinoma sarcoidosis Hodgkin's lymphoma, lymphocytic-histiocytic predominance ulcerative colitis lung carcinoma malignant colon neoplasm adrenal cortex carcinoma malignant pancreatic neoplasm B-cell chronic lymphocytic leukemia cancer pancreatic ductal adenocarcinoma extranodal nasal NK/T cell lymphoma Pick disease psoriasis skin basal cell carcinoma Hodgkin's lymphoma, mixed cellularity Huntington disease lung adenocarcinoma malignant mesothelioma medulloblastoma bipolar disorder myopathy osteosarcoma cutaneous lupus erythematosus pancreatic intraductal papillary-mucinous neoplasm Gaucher disease pituitary cancer rheumatoid arthritis Hodgkin's lymphoma, lymphocytic depletion

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.