Annotations: 8YAH

full length AP5 complex bound to SPG11-SPG15

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth E]		e8yahE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: Hypothetical protein YqbG-like	F:	ECOD (v295.2)
C	AP-5_subunit_s1	e8yahC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AP-5_subunit_s1	ECOD (v295.2)
B	Ribosomal_S3Ae	e8yahB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_S3Ae	ECOD (v295.2)
A	SPG48, TPR_AP5Z1, TPR_AP5Z1_C	e8yahA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: SPG48, TPR_AP5Z1, TPR_AP5Z1_C	ECOD (v295.2)
A	SPG48, TPR_AP5Z1_C	e8yahA2	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: SPG48, TPR_AP5Z1_C	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth E]	PF00928	Adaptor complexes medium subunit family (Adap_comp_sub)	Adaptor complexes medium subunit family	-	Family
C	PF15001	AP-5 complex subunit sigma-1 (AP-5_subunit_s1)	AP-5 complex subunit sigma-1	-	Family
B	PF21587	AP-5 complex subunit beta-1, N-terminal (AP5B1_N)	AP-5 complex subunit beta-1, N-terminal	-	Repeat
B	PF21588	AP5B1, middle domain (AP5B1_middle)	AP5B1, middle domain	-	Repeat
A	PF25154	AP-5 complex subunit zeta-1, C-terminal TPR repeats (TPR_AP5Z1_C)	AP-5 complex subunit zeta-1, C-terminal TPR repeats	-	Repeat
A	PF25153	AP-5 complex subunit zeta-1, TPR repeats (TPR_AP5Z1)	AP-5 complex subunit zeta-1, TPR repeats	-	Repeat
A	PF14764	AP-5 complex subunit, vesicle trafficking (SPG48)	AP-5 complex subunit, vesicle trafficking	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth D]	Spatacsin	protein binding binding kinase binding enzyme binding protein kinase binding identical protein binding	cellular localization transport intracellular transport establishment of localization localization axo-dendritic transport establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport cellular process microtubule-based movement microtubule-based process membrane organization cellular localization transport intracellular transport establishment of localization localization axo-dendritic transport establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport cellular process microtubule-based movement microtubule-based process membrane organization cellular component organization cellular component organization or biogenesis membrane bending vesicle localization establishment of organelle localization establishment of vesicle localization organelle localization synaptic vesicle localization synaptic vesicle transport lysosome organization organelle organization vacuole organization lytic vacuole organization multicellular organismal process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development system development developmental process plasma membrane bounded cell projection organization nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development animal gross anatomical part developmental process trans-synaptic signaling synaptic signaling regulation of biological process signaling anterograde trans-synaptic signaling biological regulation cell-cell signaling chemical synaptic transmission cell communication lysosomal membrane organization catabolic process macroautophagy autophagy autophagosome organization metabolic process process utilizing autophagic mechanism	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen cytoplasm cytosol cell periphery plasma membrane membrane somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection lytic vacuole vacuole lysosome cytoplasmic vesicle intracellular vesicle vesicle vacuolar membrane lytic vacuole membrane bounding membrane of organelle lysosomal membrane organelle membrane synapse cell junction axon endosome endomembrane system late endosome endoplasmic reticulum
D [auth E]	AP-5 complex subunit mu-1	-	localization cellular localization transport establishment of localization in cell cellular process intracellular transport establishment of localization vesicle-mediated transport endosomal transport	membrane coat protein-containing complex cellular anatomical structure intracellular anatomical structure AP-type membrane coat adaptor complex membrane membrane protein complex cytoplasm coated membrane AP-5 adaptor complex vacuolar membrane membrane-bounded organelle lytic vacuole vacuole membrane coat protein-containing complex cellular anatomical structure intracellular anatomical structure AP-type membrane coat adaptor complex membrane membrane protein complex cytoplasm coated membrane AP-5 adaptor complex vacuolar membrane membrane-bounded organelle lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle lysosomal membrane organelle membrane lysosome cytosol endosome intracellular vesicle endomembrane system cytoplasmic vesicle late endosome vesicle endosome membrane late endosome membrane cytoplasmic vesicle membrane vesicle membrane
C	AP-5 complex subunit sigma-1	-	localization transport cellular process establishment of localization vesicle-mediated transport cellular localization establishment of localization in cell intracellular transport endosomal transport cellular response to stimulus double-strand break repair response to stimulus DNA recombination primary metabolic process localization transport cellular process establishment of localization vesicle-mediated transport cellular localization establishment of localization in cell intracellular transport endosomal transport cellular response to stimulus double-strand break repair response to stimulus DNA recombination primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress recombinational repair metabolic process macromolecule metabolic process double-strand break repair via homologous recombination DNA repair cellular component organization lysosome organization organelle organization vacuole organization lytic vacuole organization cellular component organization or biogenesis	membrane coat protein-containing complex cellular anatomical structure intracellular anatomical structure AP-type membrane coat adaptor complex membrane membrane protein complex cytoplasm coated membrane AP-5 adaptor complex cytosol vacuolar membrane membrane-bounded organelle lytic vacuole membrane coat protein-containing complex cellular anatomical structure intracellular anatomical structure AP-type membrane coat adaptor complex membrane membrane protein complex cytoplasm coated membrane AP-5 adaptor complex cytosol vacuolar membrane membrane-bounded organelle lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle lysosomal membrane organelle membrane lysosome endosome intracellular vesicle endomembrane system cytoplasmic vesicle late endosome vesicle endosome membrane late endosome membrane cytoplasmic vesicle membrane vesicle membrane
B	AP-5 complex subunit beta-1	-	localization cellular localization transport establishment of localization in cell cellular process intracellular transport establishment of localization vesicle-mediated transport endosomal transport cellular component organization lysosome organization organelle organization vacuole organization lytic vacuole organization localization cellular localization transport establishment of localization in cell cellular process intracellular transport establishment of localization vesicle-mediated transport endosomal transport cellular component organization lysosome organization organelle organization vacuole organization lytic vacuole organization cellular component organization or biogenesis	membrane coat protein-containing complex cellular anatomical structure intracellular anatomical structure AP-type membrane coat adaptor complex membrane membrane protein complex cytoplasm coated membrane AP-5 adaptor complex vacuolar membrane membrane-bounded organelle lytic vacuole vacuole membrane coat protein-containing complex cellular anatomical structure intracellular anatomical structure AP-type membrane coat adaptor complex membrane membrane protein complex cytoplasm coated membrane AP-5 adaptor complex vacuolar membrane membrane-bounded organelle lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle lysosomal membrane organelle membrane lysosome endosome intracellular vesicle endomembrane system cytoplasmic vesicle late endosome vesicle
A	AP-5 complex subunit zeta-1	-	cellular localization transport intracellular transport late endosome to Golgi transport establishment of localization vesicle-mediated transport endosomal transport localization cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell cellular process Golgi vesicle transport biosynthetic process cellular localization transport intracellular transport late endosome to Golgi transport establishment of localization vesicle-mediated transport endosomal transport localization cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell cellular process Golgi vesicle transport biosynthetic process metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process cellular response to stimulus double-strand break repair response to stimulus DNA recombination primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress recombinational repair double-strand break repair via homologous recombination DNA repair autophagosome assembly catabolic process organelle assembly vacuole organization macroautophagy autophagy autophagosome organization cellular component biogenesis cellular component organization organelle organization cellular component assembly cellular component organization or biogenesis process utilizing autophagic mechanism protein catabolic process in the vacuole lysosomal protein catabolic process protein catabolic process protein metabolic process macromolecule catabolic process developmental process multicellular organismal process plasma membrane bounded cell projection organization cellular developmental process cell projection organization cell development neuron projection development nervous system development axon development generation of neurons neurogenesis multicellular organism development neuron differentiation cell differentiation neuron development anatomical structure development animal gross anatomical part developmental process system development Golgi organization endomembrane system organization lysosome organization lytic vacuole organization	membrane coat protein-containing complex cellular anatomical structure intracellular anatomical structure AP-type membrane coat adaptor complex membrane membrane protein complex cytoplasm coated membrane AP-5 adaptor complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle membrane coat protein-containing complex cellular anatomical structure intracellular anatomical structure AP-type membrane coat adaptor complex membrane membrane protein complex cytoplasm coated membrane AP-5 adaptor complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen endosome intracellular vesicle endomembrane system cytoplasmic vesicle late endosome vesicle lytic vacuole vacuole lysosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth D]	IPR028107	Spatacsin, C-terminal domain	Domain
E [auth D]	IPR028103	Spatacsin	Family
D [auth E]	IPR039591	AP-5 complex subunit mu-1	Family
D [auth E]	IPR036168	AP-2 complex subunit mu, C-terminal superfamily	Homologous Superfamily
D [auth E]	IPR028565	Mu homology domain	Domain
C	IPR029392	AP-5 complex subunit sigma-1	Family
B	IPR048978	AP-5 complex subunit beta-1, N-terminal domain	Domain
B	IPR038741	AP-5 complex subunit beta-1	Family
B	IPR048981	AP5B1, C-terminal domain	Domain
B	IPR048979	AP5B1, middle domain	Domain
B	IPR048980	AP-5 complex subunit beta-1, beta-barrel domain	Domain
A	IPR056857	AP-5 complex subunit zeta-1, N-terminal TPR domain	Domain
A	IPR016024	Armadillo-type fold	Homologous Superfamily
A	IPR055450	AP-5 complex subunit zeta-1, ARM repeats domain	Domain
A	IPR056856	AP-5 complex subunit zeta-1, C-terminal TPR domain	Domain
A	IPR028222	AP-5 complex subunit zeta-1	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E [auth D]	: Q96JI7	amyotrophic lateral sclerosis type 5 Charcot-Marie-Tooth disease Charcot-Marie-Tooth disease axonal type 2X amyotrophic lateral sclerosis hereditary spastic paraplegia 11 peripheral neuropathy hereditary spastic paraplegia juvenile amyotrophic lateral sclerosis Spastic paraplegia 11, autosomal recessive paraplegia lymphoplasmacytic lymphoma neurodegenerative disease Parkinson disease juvenile dermatomyositis motor peripheral neuropathy amyotrophic lateral sclerosis type 5 Charcot-Marie-Tooth disease Charcot-Marie-Tooth disease axonal type 2X amyotrophic lateral sclerosis hereditary spastic paraplegia 11 peripheral neuropathy hereditary spastic paraplegia juvenile amyotrophic lateral sclerosis Spastic paraplegia 11, autosomal recessive paraplegia lymphoplasmacytic lymphoma neurodegenerative disease Parkinson disease juvenile dermatomyositis motor peripheral neuropathy ovarian cancer peripheral nervous system disease astrocytic tumor dermatomyositis intellectual disability leukodystrophy
C	: Q9NUS5	large cell medulloblastoma medulloblastoma
B	: Q2VPB7	acne breast carcinoma psoriasis allergic rhinitis chronic kidney disease skin basal cell carcinoma atopic eczema osteosarcoma systemic lupus erythematosus