8XQB | pdb_00008xqb

Mature virion portal vertex of bacteriophage lambda


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
XA [auth N1]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
WA [auth J1]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
VA [auth I1]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
UA [auth H1]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
SB [auth N4]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
RB [auth J4]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
QB [auth I4]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
QA [auth N0]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
PB [auth H4]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
PA [auth J0]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
OA [auth I0]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
NA [auth H0]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
LB [auth N3]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
KB [auth J3]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
JB [auth I3]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
IB [auth H3]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
EB [auth N2]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
DB [auth J2]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
CB [auth I2]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
BB [auth H2]SCOP2B SuperfamilyHead decoration protein D (gpD, major capsid protein D) 8043128 3001943 SCOP2B (2022-06-29)
ZA [auth G2]SCOP2B SuperfamilyPhage coat protein-like 8106222 3001529 SCOP2B (2022-06-29)
YA [auth A2]SCOP2B SuperfamilyPhage coat protein-like 8106222 3001529 SCOP2B (2022-06-29)
TA [auth C1]SCOP2B SuperfamilyPhage coat protein-like 8106222 3001529 SCOP2B (2022-06-29)
SA [auth G1]SCOP2B SuperfamilyPhage coat protein-like 8106222 3001529 SCOP2B (2022-06-29)
RA [auth A1]SCOP2B SuperfamilyPhage coat protein-like 8106222 3001529 SCOP2B (2022-06-29)
OB [auth C4]SCOP2B SuperfamilyPhage coat protein-like 8106222 3001529 SCOP2B (2022-06-29)
NB [auth G4]SCOP2B SuperfamilyPhage coat protein-like 8106222 3001529 SCOP2B (2022-06-29)
MB [auth A4]SCOP2B SuperfamilyPhage coat protein-like 8106222 3001529 SCOP2B (2022-06-29)
MA [auth C0]SCOP2B SuperfamilyPhage coat protein-like 8106222 3001529 SCOP2B (2022-06-29)
LA [auth G0]SCOP2B SuperfamilyPhage coat protein-like 8106222 3001529 SCOP2B (2022-06-29)
KA [auth A0]SCOP2B SuperfamilyPhage coat protein-like 8106222 3001529 SCOP2B (2022-06-29)
HB [auth C3]SCOP2B SuperfamilyPhage coat protein-like 8106222 3001529 SCOP2B (2022-06-29)
GB [auth G3]SCOP2B SuperfamilyPhage coat protein-like 8106222 3001529 SCOP2B (2022-06-29)
FB [auth A3]SCOP2B SuperfamilyPhage coat protein-like 8106222 3001529 SCOP2B (2022-06-29)
AB [auth C2]SCOP2B SuperfamilyPhage coat protein-like 8106222 3001529 SCOP2B (2022-06-29)
V [auth U3]SCOP2B SuperfamilyPhage tail protein-like 8035093 3001913 SCOP2B (2022-06-29)
P [auth U2]SCOP2B SuperfamilyPhage tail protein-like 8035093 3001913 SCOP2B (2022-06-29)
J [auth U1]SCOP2B SuperfamilyPhage tail protein-like 8035093 3001913 SCOP2B (2022-06-29)
HA [auth U5]SCOP2B SuperfamilyPhage tail protein-like 8035093 3001913 SCOP2B (2022-06-29)
D [auth U]SCOP2B SuperfamilyPhage tail protein-like 8035093 3001913 SCOP2B (2022-06-29)
BA [auth U4]SCOP2B SuperfamilyPhage tail protein-like 8035093 3001913 SCOP2B (2022-06-29)
Z [auth W4]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
U [auth w3]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
T [auth W3]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
O [auth w2]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
N [auth W2]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
I [auth w1]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
H [auth W1]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
GA [auth w5]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
FA [auth W5]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
C [auth w]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
B [auth W]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
AA [auth w4]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
Y [auth f4]SCOP2B SuperfamilyPhage tail proteins 8040058 3000268 SCOP2B (2022-06-29)
S [auth f3]SCOP2B SuperfamilyPhage tail proteins 8040058 3000268 SCOP2B (2022-06-29)
M [auth f2]SCOP2B SuperfamilyPhage tail proteins 8040058 3000268 SCOP2B (2022-06-29)
G [auth f1]SCOP2B SuperfamilyPhage tail proteins 8040058 3000268 SCOP2B (2022-06-29)
EA [auth f5]SCOP2B SuperfamilyPhage tail proteins 8040058 3000268 SCOP2B (2022-06-29)
A [auth f]SCOP2B SuperfamilyPhage tail proteins 8040058 3000268 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
XA [auth N1]WD40e8xqbN11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
WA [auth J1]WD40e8xqbJ11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
VA [auth I1]WD40e8xqbI11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
UA [auth H1]WD40e8xqbH11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
SB [auth N4]WD40e8xqbN41 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
RB [auth J4]WD40e8xqbJ41 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
QB [auth I4]WD40e8xqbI41 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
QA [auth N0]WD40e8xqbN01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
PB [auth H4]WD40e8xqbH41 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
PA [auth J0]WD40e8xqbJ01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
OA [auth I0]WD40e8xqbI01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
NA [auth H0]WD40e8xqbH01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
LB [auth N3]WD40e8xqbN31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
KB [auth J3]WD40e8xqbJ31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
JB [auth I3]WD40e8xqbI31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
IB [auth H3]WD40e8xqbH31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
EB [auth N2]WD40e8xqbN21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
DB [auth J2]WD40e8xqbJ21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
CB [auth I2]WD40e8xqbI21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
BB [auth H2]WD40e8xqbH21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
ZA [auth G2]WD40e8xqbG21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
YA [auth A2]WD40e8xqbA21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
TA [auth C1]WD40e8xqbC11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
SA [auth G1]WD40e8xqbG11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
RA [auth A1]WD40e8xqbA11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
OB [auth C4]WD40e8xqbC41 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
NB [auth G4]WD40e8xqbG41 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
MB [auth A4]WD40e8xqbA41 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
MA [auth C0]WD40e8xqbC01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
LA [auth G0]WD40e8xqbG01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
KA [auth A0]WD40e8xqbA01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
HB [auth C3]WD40e8xqbC31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
GB [auth G3]WD40e8xqbG31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
FB [auth A3]WD40e8xqbA31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
AB [auth C2]WD40e8xqbC21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
V [auth U3]WD40e8xqbU31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
P [auth U2]WD40e8xqbU21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
J [auth U1]WD40e8xqbU11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
HA [auth U5]WD40e8xqbU51 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
D [auth U]WD40e8xqbU1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
BA [auth U4]WD40e8xqbU41 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
Z [auth W4]WD40e8xqbW41 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
U [auth w3]WD40e8xqbw31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
T [auth W3]WD40e8xqbW31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
O [auth w2]WD40e8xqbw21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
N [auth W2]WD40e8xqbW21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
I [auth w1]WD40e8xqbw11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
H [auth W1]WD40e8xqbW11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
GA [auth w5]WD40e8xqbw51 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
FA [auth W5]WD40e8xqbW51 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
C [auth w]WD40e8xqbw1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
B [auth W]WD40e8xqbW1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
AA [auth w4]WD40e8xqbw41 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
Y [auth f4]WD40e8xqbf41 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
S [auth f3]WD40e8xqbf31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
M [auth f2]WD40e8xqbf21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
G [auth f1]WD40e8xqbf11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
EA [auth f5]WD40e8xqbf51 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
A [auth f]WD40e8xqbf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Capsid decoration protein-
Major capsid protein- -
Portal protein B
Tail tube terminator protein-
Head completion protein-
Head-tail connector protein FII-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR004195Head decoration protein DFamily
IPR036630Head decoration protein D superfamilyHomologous Superfamily
IPR005564Major capsid protein GpEFamily
IPR006429Phage portal protein, lambda familyFamily
IPR035934Phage tail protein-like superfamilyHomologous Superfamily
IPR009312Minor tail protein U-likeFamily
IPR038512GpU-like superfamilyHomologous Superfamily
IPR036626Head-to-tail joining protein W superfamilyHomologous Superfamily
IPR004174Head-to-tail joining protein WFamily
IPR053734Bacteriophage Head-Tail Connecting SuperfamilyHomologous Superfamily
IPR008018Bacteriophage tail attachment protein FIIFamily