8WOC

Cryo-EM structure of SIR2/HerA complex

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth J], D [auth K], I [auth P], J [auth Q], K [auth R], C [auth J], D [auth K], I [auth P], J [auth Q], K [auth R], L [auth S], M [auth T]	PF13289	SIR2-like domain (SIR2_2)	SIR2-like domain	-	Family
A, B [auth D], E [auth L], F [auth M], G [auth N], A, B [auth D], E [auth L], F [auth M], G [auth N], H [auth O]	PF01935	Helicase HerA, central domain (DUF87)	Helicase HerA, central domain	This entry represents the central domain found in archaeal proteins such as DNA double-strand break repair helicase HerA (EC:3.6.4.12). HerA is a helicase which is able to utilise either 3' or 5' single-stranded DNA extensions for loading and subsequ ...	This entry represents the central domain found in archaeal proteins such as DNA double-strand break repair helicase HerA (EC:3.6.4.12). HerA is a helicase which is able to utilise either 3' or 5' single-stranded DNA extensions for loading and subsequent DNA duplex unwinding [1]. It forms a complex with NurA nuclease, this complex has the 5'-3' DNA end resection activity and is essential for cell viability in the crenarchaeon Sulfolobus islandicus [2]. This domain includes the the central RecA-like catalytic core and a flanking four-helix bundle [3]. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.	Domain
A, B [auth D], E [auth L], F [auth M], G [auth N], A, B [auth D], E [auth L], F [auth M], G [auth N], H [auth O]	PF05872	Helicase HerA-like C-terminal (HerA_C)	Helicase HerA-like C-terminal	HerA is a DNA helicase able to utilise either 3' or 5' single-stranded DNA extensions for loading and subsequent DNA duplex unwinding [1]. It forms a complex with NurA nuclease, this complex has the 5'-3' DNA end resection activity and is essential f ...	HerA is a DNA helicase able to utilise either 3' or 5' single-stranded DNA extensions for loading and subsequent DNA duplex unwinding [1]. It forms a complex with NurA nuclease, this complex has the 5'-3' DNA end resection activity and is essential for cell viability in the crenarchaeon Sulfolobus islandicus [2]. This entry represents the C-terminal domain of HerA which seems to be involved in the conversion of ATP hydrolysis into DNA translocation [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth J], D [auth K], I [auth P], J [auth Q], K [auth R], C [auth J], D [auth K], I [auth P], J [auth Q], K [auth R], L [auth S], M [auth T]	SIR2-like domain-containing protein	-	-	-
A, B [auth D], E [auth L], F [auth M], G [auth N], A, B [auth D], E [auth L], F [auth M], G [auth N], H [auth O]	Helicase HerA central domain-containing protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth J], D [auth K], I [auth P], J [auth Q], K [auth R], C [auth J], D [auth K], I [auth P], J [auth Q], K [auth R], L [auth S], M [auth T]	IPR039444	SIR2-like domain	Domain
C [auth J], D [auth K], I [auth P], J [auth Q], K [auth R], C [auth J], D [auth K], I [auth P], J [auth Q], K [auth R], L [auth S], M [auth T]	IPR029035	DHS-like NAD/FAD-binding domain superfamily	Homologous Superfamily
A, B [auth D], E [auth L], F [auth M], G [auth N], A, B [auth D], E [auth L], F [auth M], G [auth N], H [auth O]	IPR002789	Helicase HerA, central domain	Domain
A, B [auth D], E [auth L], F [auth M], G [auth N], A, B [auth D], E [auth L], F [auth M], G [auth N], H [auth O]	IPR033186	Helicase HerA-like C-terminal	Domain
A, B [auth D], E [auth L], F [auth M], G [auth N], A, B [auth D], E [auth L], F [auth M], G [auth N], H [auth O]	IPR025309	KTSC domain	Domain
A, B [auth D], E [auth L], F [auth M], G [auth N], A, B [auth D], E [auth L], F [auth M], G [auth N], H [auth O]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.