8WHY

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth F]	SCOP2B Superfamily	Translational proteins	8089146	3000811	SCOP2B (2022-06-29)
C [auth G]	SCOP2B Superfamily	Ribosomal protein L4	8080698	3001146	SCOP2B (2022-06-29)
D [auth H]	SCOP2B Superfamily	RL5-like	8073880	3001709	SCOP2B (2022-06-29)
G [auth M]	SCOP2B Superfamily	Ribosomal protein L13	8066067	3001134	SCOP2B (2022-06-29)
H [auth N]	SCOP2B Superfamily	50S Ribosomal protein L14-like	8072026	3000433	SCOP2B (2022-06-29)
I [auth O]	SCOP2B Superfamily	Ribosomal proteins L15p and L18e	8070563	3001045	SCOP2B (2022-06-29)
J [auth Q]	SCOP2B Superfamily	Prokaryotic ribosomal protein L17	8089012	3000995	SCOP2B (2022-06-29)
L [auth S]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8082427	3000334	SCOP2B (2022-06-29)
M [auth T]	SCOP2B Superfamily	Ribosomal protein L20	8075008	3000563	SCOP2B (2022-06-29)
N [auth U]	SCOP2B Superfamily	l21p-like	8082445	3002005	SCOP2B (2022-06-29)
O [auth V]	SCOP2B Superfamily	Ribosomal protein L22	8081516	3001078	SCOP2B (2022-06-29)
P [auth W]	SCOP2B Superfamily	Ribosomal proteins S24e, L23 and L15e	8077101	3000210	SCOP2B (2022-06-29)
Q [auth X]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8082509	3000334	SCOP2B (2022-06-29)
R [auth Z]	SCOP2B Superfamily	Ribosomal L27 protein-like	8075032	3000539	SCOP2B (2022-06-29)
S [auth 1]	SCOP2B Superfamily	L28p-like	8089398	3001966	SCOP2B (2022-06-29)
T [auth 2]	SCOP2B Superfamily	Ribosomal protein L29 (L29p)	8080678	3000713	SCOP2B (2022-06-29)
U [auth 3]	SCOP2B Superfamily	Ribosomal protein L30p/L7e	8076279	3001378	SCOP2B (2022-06-29)
W [auth 6]	SCOP2B Superfamily	Zn-binding ribosomal proteins	8075054	3001320	SCOP2B (2022-06-29)
Y [auth 8]	SCOP2B Superfamily	L35p-like	8083338	3000790	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E]	PF03947	Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)	Ribosomal Proteins L2, C-terminal domain	-	Domain
A [auth E]	PF00181	Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)	Ribosomal Proteins L2, RNA binding domain	-	Domain
B [auth F]	PF00297	Ribosomal protein L3 (Ribosomal_L3)	Ribosomal protein L3	-	Family
C [auth G]	PF00573	Ribosomal protein L4/L1 family (Ribosomal_L4)	Ribosomal protein L4/L1 family	-	Family
D [auth H]	PF00281	Ribosomal protein L5 (Ribosomal_L5)	Ribosomal protein L5	-	Domain
D [auth H]	PF00673	ribosomal L5P family C-terminus (Ribosomal_L5_C)	ribosomal L5P family C-terminus	This region is found associated with Pfam:PF00281.	Domain
E [auth I]	PF00347	Ribosomal protein L6 (Ribosomal_L6)	Ribosomal protein L6	-	Domain
F [auth J]	PF01281	Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)	Ribosomal protein L9, N-terminal domain	-	Domain
G [auth M]	PF00572	Ribosomal protein L13 (Ribosomal_L13)	Ribosomal protein L13	-	Family
H [auth N]	PF00238	Ribosomal protein L14p/L23e (Ribosomal_L14)	Ribosomal protein L14p/L23e	-	Domain
I [auth O]	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A	-	Family
J [auth Q]	PF01196	Ribosomal protein L17 (Ribosomal_L17)	Ribosomal protein L17	-	Family
K [auth R]	PF00861	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast	-	Family
L [auth S]	PF01245	Ribosomal protein L19 (Ribosomal_L19)	Ribosomal protein L19	-	Family
M [auth T]	PF00453	Ribosomal protein L20 (Ribosomal_L20)	Ribosomal protein L20	-	Family
N [auth U]	PF00829	Ribosomal prokaryotic L21 protein (Ribosomal_L21p)	Ribosomal prokaryotic L21 protein	-	Family
O [auth V]	PF00237	Ribosomal protein L22p/L17e (Ribosomal_L22)	Ribosomal protein L22p/L17e	This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.	Domain
P [auth W]	PF00276	Ribosomal protein L23 (Ribosomal_L23)	Ribosomal protein L23	-	Family
Q [auth X]	PF17136	Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)	Ribosomal proteins 50S L24/mitochondrial 39S L24	-	Family
Q [auth X]	PF00467	KOW motif (KOW)	KOW motif	-	Family
S [auth 1]	PF00830	Ribosomal L28 family (Ribosomal_L28)	Ribosomal L28 family	-	Family
T [auth 2]	PF00831	Ribosomal L29 protein (Ribosomal_L29)	Ribosomal L29 protein	-	Family
U [auth 3]	PF00327	Ribosomal protein L30p/L7e (Ribosomal_L30)	Ribosomal protein L30p/L7e	This family includes prokaryotic L30 and eukaryotic L7.	Domain
V [auth 5]	PF01783	Ribosomal L32p protein family (Ribosomal_L32p)	Ribosomal L32p protein family	-	Family
W [auth 6]	PF00471	Ribosomal protein L33 (Ribosomal_L33)	Ribosomal protein L33	-	Family
X [auth 7]	PF00468	Ribosomal protein L34 (Ribosomal_L34)	Ribosomal protein L34	-	Family
Y [auth 8]	PF01632	Ribosomal protein L35 (Ribosomal_L35p)	Ribosomal protein L35	-	Family
Z [auth 4]	PF01197	Ribosomal protein L31 (Ribosomal_L31)	Ribosomal protein L31	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E]	50S ribosomal protein L2	RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome transferase activity catalytic activity	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
B [auth F]	50S ribosomal protein L3	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
C [auth G]	50S ribosomal protein L4	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
D [auth H]	50S ribosomal protein L5	RNA binding binding organic cyclic compound binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
E [auth I]	50S ribosomal protein L6	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
F [auth J]	50S ribosomal protein L9	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
G [auth M]	50S ribosomal protein L13	RNA binding binding organic cyclic compound binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	regulation of cellular process cellular biosynthetic process organonitrogen compound biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of cellular process cellular biosynthetic process organonitrogen compound biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process organonitrogen compound metabolic process cellular metabolic process regulation of protein metabolic process negative regulation of metabolic process biological regulation regulation of cellular metabolic process primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
H [auth N]	50S ribosomal protein L14	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
I [auth O]	50S ribosomal protein L15	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome large ribosomal subunit non-membrane-bounded organelle
J [auth Q]	50S ribosomal protein L17	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
K [auth R]	50S ribosomal protein L18	RNA binding binding organic cyclic compound binding rRNA binding 5S rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
L [auth S]	50S ribosomal protein L19	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
M [auth T]	50S ribosomal protein L20	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
N [auth U]	50S ribosomal protein L21	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular anatomical structure cytoplasm cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
O [auth V]	50S ribosomal protein L22	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
P [auth W]	50S ribosomal protein L23	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
Q [auth X]	50S ribosomal protein L24	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
R [auth Z]	50S ribosomal protein L27	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
S [auth 1]	50S ribosomal protein L28	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
T [auth 2]	50S ribosomal protein L29	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
U [auth 3]	50S ribosomal protein L30	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
V [auth 5]	50S ribosomal protein L32	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome large ribosomal subunit non-membrane-bounded organelle
W [auth 6]	50S ribosomal protein L33A	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular anatomical structure cytoplasm cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
X [auth 7]	50S ribosomal protein L34	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
Y [auth 8]	50S ribosomal protein L35	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
Z [auth 4]	50S ribosomal protein L31	structural molecule activity structural constituent of ribosome cation binding ion binding binding metal ion binding small molecule binding RNA binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
AA [auth A]	23S rRNA	-	-	-
BA [auth B]	5S rRNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E]	IPR022669	Large ribosomal subunit protein uL2, C-terminal	Domain
A [auth E]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
A [auth E]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
A [auth E]	IPR022671	Large ribosomal subunit protein uL2, conserved site	Conserved Site
A [auth E]	IPR005880	Large ribosomal subunit protein uL2, bacterial/organellar-type	Family
A [auth E]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
A [auth E]	IPR022666	Large ribosomal subunit protein uL2, RNA-binding domain	Domain
A [auth E]	IPR014726	Large ribosomal subunit protein uL2, domain 3	Homologous Superfamily
A [auth E]	IPR002171	Large ribosomal subunit protein uL2	Family
B [auth F]	IPR019926	Large ribosomal subunit protein uL3, conserved site	Conserved Site
B [auth F]	IPR019927	Large ribosomal subunit protein uL3, bacterial/organelle-type	Family
B [auth F]	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
B [auth F]	IPR000597	Large ribosomal subunit protein uL3	Family
C [auth G]	IPR013005	Large ribosomal subunit protein uL4-like	Family
C [auth G]	IPR002136	Large ribosomal subunit protein uL4	Family
C [auth G]	IPR023574	Large ribosomal subunit protein uL4 domain superfamily	Homologous Superfamily
D [auth H]	IPR022803	Large ribosomal subunit protein uL5 domain superfamily	Homologous Superfamily
D [auth H]	IPR031309	Large ribosomal subunit protein uL5, C-terminal	Domain
D [auth H]	IPR031310	Large ribosomal subunit protein uL5, N-terminal	Domain
D [auth H]	IPR020930	Large ribosomal subunit protein uL5, bacterial-type	Family
D [auth H]	IPR002132	Large ribosomal subunit protein uL5	Family
E [auth I]	IPR020040	Large ribosomal subunit protein uL6, alpha-beta domain	Domain
E [auth I]	IPR036789	Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily	Homologous Superfamily
E [auth I]	IPR000702	Large ribosomal subunit protein uL6-like	Family
E [auth I]	IPR019906	Large ribosomal subunit protein uL6, bacterial-type	Family
E [auth I]	IPR002358	Large ribosomal subunit protein uL6, conserved site	Conserved Site
F [auth J]	IPR009027	Large ribosomal subunit protein bL9/RNase H1, N-terminal	Homologous Superfamily
F [auth J]	IPR020594	Large ribosomal subunit protein bL9, bacteria/chloroplast	Family
F [auth J]	IPR036935	Large ribosomal subunit protein bL9, N-terminal domain superfamily	Homologous Superfamily
F [auth J]	IPR036791	Large ribosomal subunit protein bL9, C-terminal domain superfamily	Homologous Superfamily
F [auth J]	IPR020069	Large ribosomal subunit protein bL9, C-terminal	Domain
F [auth J]	IPR020070	Large ribosomal subunit protein bL9, N-terminal	Domain
F [auth J]	IPR000244	Large ribosomal subunit protein bL9	Family
G [auth M]	IPR005822	Large ribosomal subunit protein uL13	Family
G [auth M]	IPR036899	Large ribosomal subunit protein uL13 superfamily	Homologous Superfamily
G [auth M]	IPR005823	Large ribosomal subunit protein uL13, bacterial-type	Family
H [auth N]	IPR005745	Large ribosomal subunit protein uL14, bacterial-type	Family
H [auth N]	IPR036853	Large ribosomal subunit protein uL14 superfamily	Homologous Superfamily
H [auth N]	IPR000218	Large ribosomal subunit protein uL14	Family
H [auth N]	IPR019972	Large ribosomal subunit protein uL14, conserved site	Conserved Site
I [auth O]	IPR005749	Large ribosomal subunit protein uL15, bacterial-type	Family
I [auth O]	IPR021131	Large ribosomal subunit protein uL15/eL18	Domain
I [auth O]	IPR030878	Large ribosomal subunit protein uL15	Family
I [auth O]	IPR001196	Large ribosomal subunit protein uL15, conserved site	Conserved Site
I [auth O]	IPR036227	Large ribosomal subunit protein uL15/eL18 superfamily	Homologous Superfamily
J [auth Q]	IPR036373	Large ribosomal subunit protein bL17 superfamily	Homologous Superfamily
J [auth Q]	IPR047859	Large ribosomal subunit protein bL17, conserved site	Conserved Site
J [auth Q]	IPR000456	Large ribosomal subunit protein bL17	Family
K [auth R]	IPR005484	Large ribosomal subunit protein uL18	Family
K [auth R]	IPR004389	Large ribosomal subunit protein uL18, bacterial-type	Family
L [auth S]	IPR001857	Large ribosomal subunit protein bL19	Family
L [auth S]	IPR038657	Large ribosomal subunit protein bL19 superfamily	Homologous Superfamily
L [auth S]	IPR018257	Large ribosomal subunit protein bL19, conserved site	Conserved Site
L [auth S]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
M [auth T]	IPR049946	Large ribosomal subunit protein bL20, conserved site	Conserved Site
M [auth T]	IPR035566	Ribosomal protein bL20, C-terminal	Homologous Superfamily
M [auth T]	IPR005813	Large ribosomal subunit protein bL20	Family
N [auth U]	IPR028909	Large ribosomal subunit protein bL21-like	Family
N [auth U]	IPR001787	Large ribosomal subunit protein bL21	Family
N [auth U]	IPR036164	Large ribosomal subunit protein bL21-like superfamily	Homologous Superfamily
N [auth U]	IPR018258	Large ribosomal subunit protein bL21, conserved site	Conserved Site
O [auth V]	IPR047867	Large ribosomal subunit protein uL22, bacterial/organelle-type	Family
O [auth V]	IPR018260	Large ribosomal subunit protein uL22, conserved site	Conserved Site
O [auth V]	IPR036394	Ribosomal protein uL22 superfamily	Homologous Superfamily
O [auth V]	IPR001063	Large ribosomal subunit protein uL22	Family
O [auth V]	IPR005727	Large ribosomal subunit protein uL22, bacterial/chloroplast-type	Family
P [auth W]	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
P [auth W]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
P [auth W]	IPR001014	Large ribosomal subunit protein uL23, conserved site	Conserved Site
P [auth W]	IPR013025	Large ribosomal subunit protein uL23-like	Family
Q [auth X]	IPR003256	Large ribosomal subunit protein uL24	Family
Q [auth X]	IPR041988	Large ribosomal subunit protein uL24, KOW domain	Domain
Q [auth X]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
Q [auth X]	IPR005824	KOW	Domain
Q [auth X]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
Q [auth X]	IPR005825	Large ribosomal subunit protein uL24, conserved site	Conserved Site
R [auth Z]	IPR001684	Large ribosomal subunit protein bL27	Family
R [auth Z]	IPR018261	Large ribosomal subunit protein bL27, conserved site	Conserved Site
S [auth 1]	IPR001383	Large ribosomal subunit protein bL28, bacterial-type	Family
S [auth 1]	IPR037147	Large ribosomal subunit protein bL28 superfamily	Homologous Superfamily
S [auth 1]	IPR050096	Bacterial ribosomal protein bL28	Family
S [auth 1]	IPR026569	Large ribosomal subunit protein bL28	Family
S [auth 1]	IPR034704	Large ribosomal subunit protein bL28/bL31-like superfamily	Homologous Superfamily
T [auth 2]	IPR050063	Universal ribosomal protein uL29	Family
T [auth 2]	IPR001854	Large ribosomal subunit protein uL29	Family
T [auth 2]	IPR036049	Large ribosomal subunit protein uL29 superfamily	Homologous Superfamily
T [auth 2]	IPR018254	Large ribosomal subunit protein uL29, conserved site	Conserved Site
U [auth 3]	IPR036919	Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily	Homologous Superfamily
U [auth 3]	IPR005996	Large ribosomal subunit protein uL30, bacterial-type	Family
U [auth 3]	IPR016082	Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain	Domain
U [auth 3]	IPR018038	Large ribosomal subunit protein uL30, conserved site	Conserved Site
V [auth 5]	IPR002677	Large ribosomal subunit protein bL32	Family
V [auth 5]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
W [auth 6]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
W [auth 6]	IPR038584	Large ribosomal subunit protein bL33 superfamily	Homologous Superfamily
W [auth 6]	IPR001705	Large ribosomal subunit protein bL33	Family
W [auth 6]	IPR018264	Large ribosomal subunit protein bL33, conserved site	Conserved Site
X [auth 7]	IPR020939	Large ribosomal subunit protein bL34, conserved site	Conserved Site
X [auth 7]	IPR000271	Large ribosomal subunit protein bL34	Family
Y [auth 8]	IPR021137	Large ribosomal subunit protein bL35-like	Family
Y [auth 8]	IPR018265	Large ribosomal subunit protein bL35, conserved site	Conserved Site
Y [auth 8]	IPR001706	Large ribosomal subunit protein bL35	Family
Y [auth 8]	IPR037229	Large ribosomal subunit protein bL35 superfamily	Homologous Superfamily
Z [auth 4]	IPR002150	Large ribosomal subunit protein bL31 type A/B	Family
Z [auth 4]	IPR027491	Large ribosomal subunit protein bL31 type A	Family
Z [auth 4]	IPR042105	Large ribosomal subunit protein bL31 superfamily	Homologous Superfamily
Z [auth 4]	IPR034704	Large ribosomal subunit protein bL28/bL31-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

Prepare Data

Validate Data

Deposit Data

Help and Resources

8WHY

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage