8W51

Structure of YchF(H114A) on E.coli 50S ribosomal subunit


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
I [auth J]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
I [auth J]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
J [auth K]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
K [auth L]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
L [auth M]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
M [auth N]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
N [auth O]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
P [auth Q]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
Q [auth R]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
R [auth S]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
S [auth T]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
T [auth U]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
U [auth V]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
U [auth V]PF00467KOW motif (KOW)KOW motif- Family
V [auth W]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
X [auth Y]PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
X [auth Y]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
Y [auth Z]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
Z [auth 0]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
AA [auth 1]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
BA [auth 2]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
CA [auth 3]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
DA [auth 4]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
EA [auth 5]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
23S rRNA---
5S rRNA---
50S ribosomal protein L2
50S ribosomal protein L3
50S ribosomal protein L4
50S ribosomal protein L5
50S ribosomal protein L6
50S ribosomal protein L9
I [auth J]Large ribosomal subunit protein uL11
J [auth K]50S ribosomal protein L13
K [auth L]50S ribosomal protein L14
L [auth M]50S ribosomal protein L15
M [auth N]50S ribosomal protein L16
N [auth O]50S ribosomal protein L17
O [auth P]50S ribosomal protein L18
P [auth Q]50S ribosomal protein L19
Q [auth R]50S ribosomal protein L20
R [auth S]50S ribosomal protein L21
S [auth T]50S ribosomal protein L22
T [auth U]50S ribosomal protein L23
U [auth V]50S ribosomal protein L24
V [auth W]50S ribosomal protein L25
W [auth X]50S ribosomal protein L27
X [auth Y]50S ribosomal protein L28
Y [auth Z]50S ribosomal protein L29
Z [auth 0]50S ribosomal protein L30
AA [auth 1]50S ribosomal protein L32
BA [auth 2]50S ribosomal protein L33
CA [auth 3]50S ribosomal protein L34
DA [auth 4]50S ribosomal protein L35
EA [auth 5]50S ribosomal protein L36
FA [auth y]Ribosome-binding ATPase YchF

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
IPR013005Large ribosomal subunit protein uL4-likeFamily
IPR002136Large ribosomal subunit protein uL4Family
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
IPR002132Large ribosomal subunit protein uL5Family
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
IPR000702Large ribosomal subunit protein uL6-likeFamily
IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
IPR000244Large ribosomal subunit protein bL9Family
I [auth J]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
I [auth J]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
I [auth J]IPR000911Ribosomal protein uL11Family
I [auth J]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
I [auth J]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
I [auth J]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
I [auth J]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
J [auth K]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
J [auth K]IPR005822Large ribosomal subunit protein uL13Family
J [auth K]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
J [auth K]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
K [auth L]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
K [auth L]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
K [auth L]IPR000218Large ribosomal subunit protein uL14Family
K [auth L]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
L [auth M]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
L [auth M]IPR021131Large ribosomal subunit protein uL15/eL18Domain
L [auth M]IPR030878Large ribosomal subunit protein uL15Family
L [auth M]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
L [auth M]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
M [auth N]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
M [auth N]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
M [auth N]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
M [auth N]IPR016180Large ribosomal subunit protein uL16 domainDomain
M [auth N]IPR047873Large ribosomal subunit protein uL16Family
N [auth O]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
N [auth O]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
N [auth O]IPR000456Large ribosomal subunit protein bL17Family
O [auth P]IPR005484Large ribosomal subunit protein uL18Family
O [auth P]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
P [auth Q]IPR001857Large ribosomal subunit protein bL19Family
P [auth Q]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
P [auth Q]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
P [auth Q]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth R]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
Q [auth R]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
Q [auth R]IPR005813Large ribosomal subunit protein bL20Family
R [auth S]IPR028909Large ribosomal subunit protein bL21-likeFamily
R [auth S]IPR001787Large ribosomal subunit protein bL21Family
R [auth S]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
R [auth S]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
S [auth T]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
S [auth T]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
S [auth T]IPR001063Large ribosomal subunit protein uL22Family
S [auth T]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
S [auth T]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
T [auth U]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
T [auth U]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
T [auth U]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
T [auth U]IPR013025Large ribosomal subunit protein uL23-likeFamily
U [auth V]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
U [auth V]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
U [auth V]IPR003256Large ribosomal subunit protein uL24Family
U [auth V]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
U [auth V]IPR005824KOWDomain
U [auth V]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
V [auth W]IPR020055Ribosomal protein bL25, short-formFamily
V [auth W]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
V [auth W]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
V [auth W]IPR050070Bacterial ribosomal protein bL25Family
V [auth W]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
W [auth X]IPR001684Large ribosomal subunit protein bL27Family
W [auth X]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
X [auth Y]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
X [auth Y]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
X [auth Y]IPR026569Large ribosomal subunit protein bL28Family
X [auth Y]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
Y [auth Z]IPR050063Universal ribosomal protein uL29Family
Y [auth Z]IPR001854Large ribosomal subunit protein uL29Family
Y [auth Z]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
Y [auth Z]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
Z [auth 0]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
Z [auth 0]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
Z [auth 0]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
Z [auth 0]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
AA [auth 1]IPR002677Large ribosomal subunit protein bL32Family
AA [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AA [auth 1]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
BA [auth 2]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BA [auth 2]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
BA [auth 2]IPR001705Large ribosomal subunit protein bL33Family
BA [auth 2]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
CA [auth 3]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
CA [auth 3]IPR000271Large ribosomal subunit protein bL34Family
DA [auth 4]IPR021137Large ribosomal subunit protein bL35-likeFamily
DA [auth 4]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
DA [auth 4]IPR001706Large ribosomal subunit protein bL35Family
DA [auth 4]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
EA [auth 5]IPR000473Large ribosomal subunit protein bL36Family
EA [auth 5]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
FA [auth y]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
FA [auth y]IPR012676TGS-likeHomologous Superfamily
FA [auth y]IPR004095TGSDomain
FA [auth y]IPR004396Ribosome-binding ATPase YchF/Obg-like ATPase 1Family
FA [auth y]IPR023192TGS-like domain superfamilyHomologous Superfamily
FA [auth y]IPR013029YchF, C-terminal domainDomain
FA [auth y]IPR012675Beta-grasp domain superfamilyHomologous Superfamily
FA [auth y]IPR006073GTP binding domainDomain
FA [auth y]IPR041706YchF, N-terminalDomain
FA [auth y]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily