8VJO | pdb_00008vjo

Cryo-EM structure of Myxococcus xanthus EncA encapsulin shell loaded with EncD cargo

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPhage coat protein-like 8054153 3001529 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyPhage coat protein-like 8054153 3001529 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyPhage coat protein-like 8054153 3001529 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AWD40e8vjoA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
E [auth C]WD40e8vjoC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
C [auth B]WD40e8vjoB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
C [auth B],
E [auth C]		PF04454Encapsulating protein for peroxidase (Linocin_M18)Encapsulating protein for peroxidase- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth F],
D [auth G],
F [auth H]		Encapsulin nanocompartment cargo protein EncD -
A,
C [auth B],
E [auth C]		EncA-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
C [auth B],
E [auth C]		IPR007544Type 1 encapsulin shell proteinFamily
A,
C [auth B],
E [auth C]		IPR051429Encapsulin nanocompartmentFamily