8VG1

Cryo-EM structure of FoxA1 and GATA4 in complex with ALBN1 nucleosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, F
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
C, G
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
K [auth O]PF00250Forkhead domain (Forkhead)Forkhead domain- Domain
L [auth T]PF00320GATA zinc finger (GATA)GATA zinc fingerThis domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, E
Histone H3.1
B, F
Histone H4
C, G
Histone H2A type 1-B/E
D, H
Histone H2B type 1-J
DNA (171-MER)---
DNA (171-MER)---
K [auth O]Hepatocyte nuclear factor 3-alpha
L [auth T]Maltose/maltodextrin-binding periplasmic protein,Transcription factor GATA-4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, E
IPR009072Histone-foldHomologous Superfamily
A, E
IPR007125Histone H2A/H2B/H3Domain
A, E
IPR000164Histone H3/CENP-AFamily
B, F
IPR009072Histone-foldHomologous Superfamily
B, F
IPR035425CENP-T/Histone H4, histone foldDomain
B, F
IPR001951Histone H4Family
B, F
IPR019809Histone H4, conserved siteConserved Site
B, F
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
C, G
IPR009072Histone-foldHomologous Superfamily
C, G
IPR007125Histone H2A/H2B/H3Domain
C, G
IPR002119Histone H2AFamily
C, G
IPR032454Histone H2A, C-terminal domainDomain
C, G
IPR032458Histone H2A conserved siteConserved Site
D, H
IPR009072Histone-foldHomologous Superfamily
D, H
IPR007125Histone H2A/H2B/H3Domain
D, H
IPR000558Histone H2BFamily
K [auth O]IPR013638Fork-head N-terminalDomain
K [auth O]IPR018122Fork head domain conserved site1Conserved Site
K [auth O]IPR001766Fork head domainDomain
K [auth O]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
K [auth O]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
K [auth O]IPR018533Forkhead box protein, C-terminalDomain
K [auth O]IPR030456Fork head domain conserved site 2Conserved Site
K [auth O]IPR050211Forkhead box domain-containing proteinFamily
L [auth T]IPR006061Solute-binding family 1, conserved siteConserved Site
L [auth T]IPR006060Maltose/Cyclodextrin ABC transporter, substrate-binding proteinFamily
L [auth T]IPR006059Bacterial-type extracellular solute-binding proteinFamily
L [auth T]IPR000679Zinc finger, GATA-typeDomain
L [auth T]IPR013088Zinc finger, NHR/GATA-typeHomologous Superfamily
L [auth T]IPR039355Transcription factor GATAFamily
L [auth T]IPR008013GATA-type transcription activator, N-terminalDomain
L [auth T]IPR016375Transcription factor GATA-4/5/6Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, E
PharosP68431
B, F
PharosP62805
C, G
PharosP04908
D, H
PharosP06899
K [auth O]PharosP55317
L [auth T]PharosP43694