8VFZ

Cryo-EM structure of FoxA1 in complex with ALBN1 nucleosome (class 2)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth G]SCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
H [auth C]SCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
F [auth A]SCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
J [auth E]SCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
G [auth B]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
K [auth F]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth O],
D [auth P]
PF00250Forkhead domain (Forkhead)Forkhead domain- Domain
E [auth G],
H [auth C]
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
G [auth B],
K [auth F]
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth O],
D [auth P]
Hepatocyte nuclear factor 3-alpha
B [auth I]DNA (171-MER)---
C [auth J]DNA (171-MER)---
E [auth G],
H [auth C]
Histone H2A type 1-B/E
F [auth A],
J [auth E]
Histone H3.1
G [auth B],
K [auth F]
Histone H4
I [auth D],
L [auth H]
Histone H2B type 1-J

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth O],
D [auth P]
IPR013638Fork-head N-terminalDomain
A [auth O],
D [auth P]
IPR018122Fork head domain conserved site1Conserved Site
A [auth O],
D [auth P]
IPR001766Fork head domainDomain
A [auth O],
D [auth P]
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
A [auth O],
D [auth P]
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
A [auth O],
D [auth P]
IPR018533Forkhead box protein, C-terminalDomain
A [auth O],
D [auth P]
IPR030456Fork head domain conserved site 2Conserved Site
A [auth O],
D [auth P]
IPR050211Forkhead box domain-containing proteinFamily
E [auth G],
H [auth C]
IPR009072Histone-foldHomologous Superfamily
E [auth G],
H [auth C]
IPR007125Histone H2A/H2B/H3Domain
E [auth G],
H [auth C]
IPR002119Histone H2AFamily
E [auth G],
H [auth C]
IPR032454Histone H2A, C-terminal domainDomain
E [auth G],
H [auth C]
IPR032458Histone H2A conserved siteConserved Site
F [auth A],
J [auth E]
IPR009072Histone-foldHomologous Superfamily
F [auth A],
J [auth E]
IPR007125Histone H2A/H2B/H3Domain
F [auth A],
J [auth E]
IPR000164Histone H3/CENP-AFamily
G [auth B],
K [auth F]
IPR009072Histone-foldHomologous Superfamily
G [auth B],
K [auth F]
IPR035425CENP-T/Histone H4, histone foldDomain
G [auth B],
K [auth F]
IPR001951Histone H4Family
G [auth B],
K [auth F]
IPR019809Histone H4, conserved siteConserved Site
G [auth B],
K [auth F]
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
I [auth D],
L [auth H]
IPR009072Histone-foldHomologous Superfamily
I [auth D],
L [auth H]
IPR007125Histone H2A/H2B/H3Domain
I [auth D],
L [auth H]
IPR000558Histone H2BFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth O],
D [auth P]
PharosP55317
E [auth G],
H [auth C]
PharosP04908
F [auth A],
J [auth E]
PharosP68431
G [auth B],
K [auth F]
PharosP62805
I [auth D],
L [auth H]
PharosP06899