Annotations: 8VDU

Crystal structure of hybrid insulin peptide (InsC8-15-IAPP74-80) bound to HLA-DQ8

External Resource: Annotation

Domain Annotation: ECOD Classification
IMGT Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	WD40	e8vduB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
E	WD40	e8vduE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
H	WD40	e8vduH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
K	WD40	e8vduK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
A	WD40	e8vduA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
G	WD40	e8vduG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
J	WD40	e8vduJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
D	WD40	e8vduD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
B, E, H, K	MH2 HLA-DQ8	II-ALPHA	Homo sapiens (human)	HLA-DQB1*0302	G-DOMAIN G-ALPHA, C-LIKE-DOMAIN C-LIKE	MH	II-ALPHA	IMGT (202622-0)
A, D, G, J	MH2 HLA-DQ8	II-ALPHA	Homo sapiens (human)	HLA-DQA10301, HLA-DQA10302, HLA-DQA1*0303	G-DOMAIN G-ALPHA, C-LIKE-DOMAIN C-LIKE	MH	II-ALPHA	IMGT (202622-0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F, I, L	Hybrid insulin peptide (HIP; InsC8-15-IAPP74-80)	-	-	-
B, E, H, K	MHC class II HLA-DQ-beta-1	-	antigen processing and presentation antigen processing and presentation of peptide or polysaccharide antigen via MHC class II immune system process response to stimulus immune response adaptive immune response	vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure organelle lysosomal membrane cytoplasm vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure organelle lysosomal membrane cytoplasm organelle membrane lysosome MHC protein complex cell periphery MHC class II protein complex protein-containing complex plasma membrane protein complex plasma membrane membrane protein complex endosome membrane endosome intracellular vesicle endomembrane system cytoplasmic vesicle membrane vesicle membrane cytoplasmic vesicle vesicle
A, D, G, J	MHC class II HLA-DQ-alpha chain	-	antigen processing and presentation antigen processing and presentation of peptide or polysaccharide antigen via MHC class II immune system process response to stimulus immune response adaptive immune response	vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure organelle lysosomal membrane cytoplasm vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure organelle lysosomal membrane cytoplasm organelle membrane lysosome MHC protein complex cell periphery MHC class II protein complex protein-containing complex plasma membrane protein complex plasma membrane membrane protein complex endosome membrane endosome intracellular vesicle endomembrane system cytoplasmic vesicle membrane vesicle membrane cytoplasmic vesicle vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, E, H, K	IPR000353	MHC class II, beta chain, N-terminal	Domain
B, E, H, K	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
B, E, H, K	IPR050160	Major Histocompatibility Complex/Immunoglobulin	Family
B, E, H, K	IPR014745	MHC class II, alpha/beta chain, N-terminal	Homologous Superfamily
B, E, H, K	IPR003597	Immunoglobulin C1-set	Domain
B, E, H, K	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B, E, H, K	IPR011162	MHC classes I/II-like antigen recognition protein	Homologous Superfamily
B, E, H, K	IPR007110	Immunoglobulin-like domain	Domain
B, E, H, K	IPR003006	Immunoglobulin/major histocompatibility complex, conserved site	Conserved Site
A, D, G, J	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A, D, G, J	IPR050160	Major Histocompatibility Complex/Immunoglobulin	Family
A, D, G, J	IPR014745	MHC class II, alpha/beta chain, N-terminal	Homologous Superfamily
A, D, G, J	IPR003597	Immunoglobulin C1-set	Domain
A, D, G, J	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, D, G, J	IPR011162	MHC classes I/II-like antigen recognition protein	Homologous Superfamily
A, D, G, J	IPR007110	Immunoglobulin-like domain	Domain
A, D, G, J	IPR001003	MHC class II, alpha chain, N-terminal	Domain
A, D, G, J	IPR003006	Immunoglobulin/major histocompatibility complex, conserved site	Conserved Site

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8VDU | pdb_00008vdu

Crystal structure of hybrid insulin peptide (InsC8-15-IAPP74-80) bound to HLA-DQ8

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage