AA [auth C] PF03947 Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) Ribosomal Proteins L2, C-terminal domain - Domain AA [auth C] PF00181 Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) Ribosomal Proteins L2, RNA binding domain - Domain AA [auth C] PF07650 KH domain (KH_2) KH domain - Domain AA [auth C] PF00189 Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) Ribosomal protein S3, C-terminal domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain CA [auth E] PF03719 Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) Ribosomal protein S5, C-terminal domain - Domain CA [auth E] PF00573 Ribosomal protein L4/L1 family (Ribosomal_L4) Ribosomal protein L4/L1 family - Family CA [auth E] PF00333 Ribosomal protein S5, N-terminal domain (Ribosomal_S5) Ribosomal protein S5, N-terminal domain - Domain IA [auth K] PF00411 Ribosomal protein S11 (Ribosomal_S11) Ribosomal protein S11 - Family OA [auth Q] PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast - Family OA [auth Q] PF00366 Ribosomal protein S17 (Ribosomal_S17) Ribosomal protein S17 - Domain UA [auth W] PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24) Ribosomal proteins 50S L24/mitochondrial 39S L24 - Family UA [auth W] PF00467 KOW motif (KOW) KOW motif - Family VA [auth X] PF14693 Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C) Ribosomal protein TL5, C-terminal domain This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ... This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC proteins. TL5 or CTC are not found in Eukarya or Archaea. In some Bacteria, including E. coli, this ribosomal subunit occurs as a single domain protein (named Ribosomal subunit L25), where the only domain is homologous to TL5 N-terminal domain (hence included in family Pfam:PF01386). The function of the C-terminal domain of TLC is at present unknown. Domain VA [auth X] PF01386 Ribosomal L25p family (Ribosomal_L25p) Ribosomal L25p family Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain AB [auth 3] PF01197 Ribosomal protein L31 (Ribosomal_L31) Ribosomal protein L31 - Family DB [auth 6] PF00468 Ribosomal protein L34 (Ribosomal_L34) Ribosomal protein L34 - Family Z [auth B] PF00318 Ribosomal protein S2 (Ribosomal_S2) Ribosomal protein S2 - Family BA [auth D] PF00163 Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) Ribosomal protein S4/S9 N-terminal domain - Family BA [auth D] PF00297 Ribosomal protein L3 (Ribosomal_L3) Ribosomal protein L3 - Family BA [auth D] PF01479 S4 domain (S4) S4 domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. Domain DA [auth F] PF00281 Ribosomal protein L5 (Ribosomal_L5) Ribosomal protein L5 - Domain DA [auth F] PF01250 Ribosomal protein S6 (Ribosomal_S6) Ribosomal protein S6 - Domain DA [auth F] PF00673 ribosomal L5P family C-terminus (Ribosomal_L5_C) ribosomal L5P family C-terminus This region is found associated with Pfam:PF00281. Domain EA [auth G] PF00347 Ribosomal protein L6 (Ribosomal_L6) Ribosomal protein L6 - Domain FA [auth H] PF01281 Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) Ribosomal protein L9, N-terminal domain - Domain FA [auth H] PF03948 Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C) Ribosomal protein L9, C-terminal domain - Domain FA [auth H] PF00410 Ribosomal protein S8 (Ribosomal_S8) Ribosomal protein S8 - Domain GA [auth I] PF00380 Ribosomal protein S9/S16 (Ribosomal_S9) Ribosomal protein S9/S16 - Family GA [auth I] PF00466 Ribosomal protein L10 (Ribosomal_L10) Ribosomal protein L10 - Family HA [auth J] PF03946 Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) Ribosomal protein L11, N-terminal domain The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain HA [auth J] PF00338 Ribosomal protein S10p/S20e (Ribosomal_S10) Ribosomal protein S10p/S20e This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain HA [auth J] PF00298 Ribosomal protein L11, RNA binding domain (Ribosomal_L11) Ribosomal protein L11, RNA binding domain - Domain JA [auth L] PF00164 Ribosomal protein S12/S23 (Ribosom_S12_S23) Ribosomal protein S12/S23 - Family JA [auth L] PF00572 Ribosomal protein L13 (Ribosomal_L13) Ribosomal protein L13 - Family KA [auth M] PF00238 Ribosomal protein L14p/L23e (Ribosomal_L14) Ribosomal protein L14p/L23e - Domain KA [auth M] PF00416 Ribosomal protein S13/S18 (Ribosomal_S13) Ribosomal protein S13/S18 - Family LA [auth N] PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A - Family LA [auth N] PF00253 Ribosomal protein S14p/S29e (Ribosomal_S14) Ribosomal protein S14p/S29e - Family MA [auth O] PF00252 Ribosomal protein L16p/L10e (Ribosomal_L16) Ribosomal protein L16p/L10e - Domain MA [auth O] PF00312 Ribosomal protein S15 (Ribosomal_S15) Ribosomal protein S15 - Domain NA [auth P] PF00886 Ribosomal protein S16 (Ribosomal_S16) Ribosomal protein S16 - Family NA [auth P] PF01196 Ribosomal protein L17 (Ribosomal_L17) Ribosomal protein L17 - Family PA [auth R] PF01084 Ribosomal protein S18 (Ribosomal_S18) Ribosomal protein S18 - Family PA [auth R] PF01245 Ribosomal protein L19 (Ribosomal_L19) Ribosomal protein L19 - Family QA [auth S] PF00453 Ribosomal protein L20 (Ribosomal_L20) Ribosomal protein L20 - Family QA [auth S] PF00203 Ribosomal protein S19 (Ribosomal_S19) Ribosomal protein S19 - Domain RA [auth T] PF01649 Ribosomal protein S20 (Ribosomal_S20p) Ribosomal protein S20 - Family RA [auth T] PF00829 Ribosomal prokaryotic L21 protein (Ribosomal_L21p) Ribosomal prokaryotic L21 protein - Family SA [auth U] PF00237 Ribosomal protein L22p/L17e (Ribosomal_L22) Ribosomal protein L22p/L17e This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain TA [auth V] PF00276 Ribosomal protein L23 (Ribosomal_L23) Ribosomal protein L23 - Family XA [auth Z] PF00830 Ribosomal L28 family (Ribosomal_L28) Ribosomal L28 family - Family YA [auth 1] PF00831 Ribosomal L29 protein (Ribosomal_L29) Ribosomal L29 protein - Family ZA [auth 2] PF00327 Ribosomal protein L30p/L7e (Ribosomal_L30) Ribosomal protein L30p/L7e This family includes prokaryotic L30 and eukaryotic L7. Domain BB [auth 4] PF01783 Ribosomal L32p protein family (Ribosomal_L32p) Ribosomal L32p protein family - Family CB [auth 5] PF00471 Ribosomal protein L33 (Ribosomal_L33) Ribosomal protein L33 - Family EB [auth 7] PF01632 Ribosomal protein L35 (Ribosomal_L35p) Ribosomal protein L35 - Family FB [auth 8] PF00444 Ribosomal protein L36 (Ribosomal_L36) Ribosomal protein L36 - Domain 
