8V40 | pdb_00008v40

CryoEM Structure of Diffocin - postcontracted - Collar - final state

External Resource: Annotation

Domain Annotation: ECOD Classification
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth E]	V-set	e8v40E1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
Y [auth D]	V-set	e8v40D1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
U [auth N]	V-set	e8v40N1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
S [auth V]	V-set	e8v40V1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
R [auth Q]	V-set	e8v40Q1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
PA [auth L]	V-set	e8v40L1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
NA [auth T]	V-set	e8v40T1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
N [auth M]	V-set	e8v40M1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
MA [auth S]	V-set	e8v40S1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
L [auth U]	V-set	e8v40U1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
K [auth P]	V-set	e8v40P1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
IA [auth O]	V-set	e8v40O1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
GA [auth W]	V-set	e8v40W1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
G [auth B]	V-set	e8v40B1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
FA [auth R]	V-set	e8v40R1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
E [auth F]	V-set	e8v40F1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
D [auth C]	V-set	e8v40C1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
BA [auth A]	V-set	e8v40A1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
X [auth K]	V-set	e8v40K1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
W [auth H]	V-set	e8v40H1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
V [auth J]	V-set	e8v40J1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
Q [auth o]	V-set	e8v40o1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
P [auth g]	V-set	e8v40g1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
O [auth l]	V-set	e8v40l1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
LA [auth e]	V-set	e8v40e1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
KA [auth Y]	V-set	e8v40Y1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
JA [auth c]	V-set	e8v40c1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
J [auth n]	V-set	e8v40n1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
I [auth f]	V-set	e8v40f1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
H [auth k]	V-set	e8v40k1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
EA [auth p]	V-set	e8v40p1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
DA [auth j]	V-set	e8v40j1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
CA [auth m]	V-set	e8v40m1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
C [auth i]	V-set	e8v40i1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
B [auth d]	V-set	e8v40d1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
A [auth h]	V-set	e8v40h1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth G], F [auth I], HA [auth b], M [auth Z], OA [auth X], AA [auth G], F [auth I], HA [auth b], M [auth Z], OA [auth X], T [auth a]	IPR049254	Phage tail terminator	Family
BA [auth A], D [auth C], E [auth F], FA [auth R], G [auth B], BA [auth A], D [auth C], E [auth F], FA [auth R], G [auth B], GA [auth W], IA [auth O], K [auth P], L [auth U], MA [auth S], N [auth M], NA [auth T], PA [auth L], R [auth Q], S [auth V], U [auth N], Y [auth D], Z [auth E]	IPR020287	Tail sheath protein, C-terminal domain	Domain
BA [auth A], D [auth C], E [auth F], FA [auth R], G [auth B], BA [auth A], D [auth C], E [auth F], FA [auth R], G [auth B], GA [auth W], IA [auth O], K [auth P], L [auth U], MA [auth S], N [auth M], NA [auth T], PA [auth L], R [auth Q], S [auth V], U [auth N], Y [auth D], Z [auth E]	IPR035089	Tail sheath protein, subtilisin-like domain	Domain
A [auth h], B [auth d], C [auth i], CA [auth m], DA [auth j], A [auth h], B [auth d], C [auth i], CA [auth m], DA [auth j], EA [auth p], H [auth k], I [auth f], J [auth n], JA [auth c], KA [auth Y], LA [auth e], O [auth l], P [auth g], Q [auth o], V [auth J], W [auth H], X [auth K]	IPR018989	Phage tail tube protein	Family
A [auth h], B [auth d], C [auth i], CA [auth m], DA [auth j], A [auth h], B [auth d], C [auth i], CA [auth m], DA [auth j], EA [auth p], H [auth k], I [auth f], J [auth n], JA [auth c], KA [auth Y], LA [auth e], O [auth l], P [auth g], Q [auth o], V [auth J], W [auth H], X [auth K]	IPR038628	XkdM-like superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.