8UMY

Atomic model of the human CTF18-RFC-PCNA-DNA ternary complex with narrow PCNA opening state II (state 6)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	DNA clamp	8032796	3000780	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	DNA clamp	8032799	3000780	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	DNA clamp	8032796	3000780	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	DNA clamp	8032799	3000780	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	DNA clamp	8032796	3000780	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	DNA clamp	8032799	3000780	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain
B	PF08542	Replication factor C C-terminal domain (Rep_fac_C)	Replication factor C C-terminal domain	This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which resul ...	This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which results in only three of the five RFC subunits (RFC-A, RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped gap between RFC-E and the PCNA clamp-loader complex. The C-terminal is vital for the correct orientation of RFC-E with respect to RFC-A [1].	Domain
B	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain
C	PF08542	Replication factor C C-terminal domain (Rep_fac_C)	Replication factor C C-terminal domain	This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which resul ...	This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which results in only three of the five RFC subunits (RFC-A, RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped gap between RFC-E and the PCNA clamp-loader complex. The C-terminal is vital for the correct orientation of RFC-E with respect to RFC-A [1].	Domain
C	PF21960	RCF1/5-like, AAA+ ATPase lid domain (RCF1-5-like_lid)	RCF1/5-like, AAA+ ATPase lid domain	Sliding clamps are DNA-tracking platforms that are essential for processive DNA replication and it is carried out by a five-protein clamp loader complex, the replication factor-C (RFC) complex. RFC forms a stable ATP-dependent complex with the eukary ...	Sliding clamps are DNA-tracking platforms that are essential for processive DNA replication and it is carried out by a five-protein clamp loader complex, the replication factor-C (RFC) complex. RFC forms a stable ATP-dependent complex with the eukaryotic sliding clamp, PCNA, which binds specifically to primed DNA. These proteins share the same domain architecture consisting of a AAA+ ATPase, a lid domain and a C-terminal helical domain. This entry represents the AAA+ ATPase lid from RFC proteins, such as RFC5 from yeast [1].	Domain
C	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain
D	PF08542	Replication factor C C-terminal domain (Rep_fac_C)	Replication factor C C-terminal domain	This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which resul ...	This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which results in only three of the five RFC subunits (RFC-A, RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped gap between RFC-E and the PCNA clamp-loader complex. The C-terminal is vital for the correct orientation of RFC-E with respect to RFC-A [1].	Domain
D	PF21960	RCF1/5-like, AAA+ ATPase lid domain (RCF1-5-like_lid)	RCF1/5-like, AAA+ ATPase lid domain	Sliding clamps are DNA-tracking platforms that are essential for processive DNA replication and it is carried out by a five-protein clamp loader complex, the replication factor-C (RFC) complex. RFC forms a stable ATP-dependent complex with the eukary ...	Sliding clamps are DNA-tracking platforms that are essential for processive DNA replication and it is carried out by a five-protein clamp loader complex, the replication factor-C (RFC) complex. RFC forms a stable ATP-dependent complex with the eukaryotic sliding clamp, PCNA, which binds specifically to primed DNA. These proteins share the same domain architecture consisting of a AAA+ ATPase, a lid domain and a C-terminal helical domain. This entry represents the AAA+ ATPase lid from RFC proteins, such as RFC5 from yeast [1].	Domain
D	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain
E	PF21960	RCF1/5-like, AAA+ ATPase lid domain (RCF1-5-like_lid)	RCF1/5-like, AAA+ ATPase lid domain	Sliding clamps are DNA-tracking platforms that are essential for processive DNA replication and it is carried out by a five-protein clamp loader complex, the replication factor-C (RFC) complex. RFC forms a stable ATP-dependent complex with the eukary ...	Sliding clamps are DNA-tracking platforms that are essential for processive DNA replication and it is carried out by a five-protein clamp loader complex, the replication factor-C (RFC) complex. RFC forms a stable ATP-dependent complex with the eukaryotic sliding clamp, PCNA, which binds specifically to primed DNA. These proteins share the same domain architecture consisting of a AAA+ ATPase, a lid domain and a C-terminal helical domain. This entry represents the AAA+ ATPase lid from RFC proteins, such as RFC5 from yeast [1].	Domain
E	PF13177	DNA polymerase III, delta subunit (DNA_pol3_delta2)	DNA polymerase III, delta subunit	DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction [1]. The delta subunit is also known as ...	DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction [1]. The delta subunit is also known as HolA.	Domain
E	PF22534	Replication factor C subunit 3, C-terminal domain (RFC_C)	Replication factor C subunit 3, C-terminal domain	This entry represents the C-terminal domain of Replication Factor C (RFC) subunit 3 and related proteins. RFC consists of five different AAA+ ATPase subunits and it functions as a structure-specific, DNA-dependent ATPase that is required for DNA repl ...	This entry represents the C-terminal domain of Replication Factor C (RFC) subunit 3 and related proteins. RFC consists of five different AAA+ ATPase subunits and it functions as a structure-specific, DNA-dependent ATPase that is required for DNA replication.	Domain
F, G, H	PF02747	Proliferating cell nuclear antigen, C-terminal domain (PCNA_C)	Proliferating cell nuclear antigen, C-terminal domain	N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA.	Domain
F, G, H	PF00705	Proliferating cell nuclear antigen, N-terminal domain (PCNA_N)	Proliferating cell nuclear antigen, N-terminal domain	N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Chromosome transmission fidelity protein 18 homolog	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process regulation of cellular process regulation of catalytic activity positive regulation of biological process regulation of transferase activity regulation of DNA biosynthetic process positive regulation of macromolecule biosynthetic process nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process regulation of cellular process regulation of catalytic activity positive regulation of biological process regulation of transferase activity regulation of DNA biosynthetic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleic acid biosynthetic process positive regulation of metabolic process positive regulation of molecular function positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of biological process DNA-templated DNA replication positive regulation of nucleobase-containing compound metabolic process positive regulation of transferase activity biological regulation positive regulation of catalytic activity positive regulation of DNA biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process regulation of molecular function regulation of DNA-directed DNA polymerase activity biosynthetic process positive regulation of DNA metabolic process regulation of DNA-templated DNA replication regulation of macromolecule biosynthetic process regulation of metabolic process DNA biosynthetic process positive regulation of DNA-directed DNA polymerase activity regulation of DNA metabolic process regulation of DNA replication cellular component organization DNA duplex unwinding organelle organization DNA geometric change chromosome organization DNA conformation change cellular component organization or biogenesis	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex Ctf18 RFC-like complex nucleus nuclear protein-containing complex intracellular membraneless organelle chromosome intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex Ctf18 RFC-like complex nucleus nuclear protein-containing complex intracellular membraneless organelle chromosome intracellular membrane-bounded organelle intracellular organelle organelle membraneless organelle membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
B	Replication factor C subunit 2	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity protein binding enzyme binding	regulation of cellular process regulation of catalytic activity positive regulation of biological process regulation of transferase activity regulation of DNA biosynthetic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process positive regulation of metabolic process positive regulation of molecular function positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of cellular process regulation of catalytic activity positive regulation of biological process regulation of transferase activity regulation of DNA biosynthetic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process positive regulation of metabolic process positive regulation of molecular function positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of biological process DNA-templated DNA replication positive regulation of nucleobase-containing compound metabolic process positive regulation of transferase activity biological regulation positive regulation of catalytic activity primary metabolic process positive regulation of DNA biosynthetic process regulation of macromolecule metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process regulation of molecular function regulation of DNA-directed DNA polymerase activity DNA replication biosynthetic process positive regulation of DNA metabolic process regulation of DNA-templated DNA replication regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process DNA biosynthetic process positive regulation of DNA-directed DNA polymerase activity regulation of DNA metabolic process regulation of DNA replication cellular response to stimulus response to stimulus cellular response to stress DNA damage response response to stress DNA repair cellular component organization DNA duplex unwinding organelle organization DNA geometric change chromosome organization DNA conformation change cellular component organization or biogenesis	intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure DNA replication factor C complex organelle membraneless organelle replication fork intracellular membraneless organelle chromosome membrane-bounded organelle Ctf18 RFC-like complex nucleus nuclear protein-containing complex intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure DNA replication factor C complex organelle membraneless organelle replication fork intracellular membraneless organelle chromosome membrane-bounded organelle Ctf18 RFC-like complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
C	Replication factor C subunit 5	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity protein binding enzyme binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process regulation of cellular process regulation of catalytic activity positive regulation of biological process regulation of transferase activity regulation of DNA biosynthetic process positive regulation of macromolecule biosynthetic process nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process regulation of cellular process regulation of catalytic activity positive regulation of biological process regulation of transferase activity regulation of DNA biosynthetic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleic acid biosynthetic process positive regulation of metabolic process positive regulation of molecular function positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of biological process DNA-templated DNA replication positive regulation of nucleobase-containing compound metabolic process positive regulation of transferase activity biological regulation positive regulation of catalytic activity positive regulation of DNA biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process regulation of molecular function regulation of DNA-directed DNA polymerase activity biosynthetic process positive regulation of DNA metabolic process regulation of DNA-templated DNA replication regulation of macromolecule biosynthetic process regulation of metabolic process DNA biosynthetic process positive regulation of DNA-directed DNA polymerase activity regulation of DNA metabolic process regulation of DNA replication cellular response to stimulus response to stimulus cellular response to stress DNA damage response response to stress DNA repair cellular component organization DNA duplex unwinding organelle organization DNA geometric change chromosome organization DNA conformation change cellular component organization or biogenesis	intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure DNA replication factor C complex organelle membraneless organelle replication fork intracellular membraneless organelle chromosome membrane-bounded organelle Ctf18 RFC-like complex nucleus nuclear protein-containing complex intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure DNA replication factor C complex organelle membraneless organelle replication fork intracellular membraneless organelle chromosome membrane-bounded organelle Ctf18 RFC-like complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
D	Replication factor C subunit 4	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	DNA-templated DNA replication primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process DNA strand elongation DNA replication metabolic process cellular process DNA strand elongation involved in DNA replication macromolecule metabolic process regulation of cellular process regulation of catalytic activity positive regulation of biological process DNA-templated DNA replication primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process DNA strand elongation DNA replication metabolic process cellular process DNA strand elongation involved in DNA replication macromolecule metabolic process regulation of cellular process regulation of catalytic activity positive regulation of biological process regulation of transferase activity regulation of DNA biosynthetic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleic acid biosynthetic process positive regulation of metabolic process positive regulation of molecular function positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of biological process positive regulation of nucleobase-containing compound metabolic process positive regulation of transferase activity biological regulation positive regulation of catalytic activity positive regulation of DNA biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process regulation of molecular function regulation of DNA-directed DNA polymerase activity biosynthetic process positive regulation of DNA metabolic process regulation of DNA-templated DNA replication regulation of macromolecule biosynthetic process regulation of metabolic process DNA biosynthetic process positive regulation of DNA-directed DNA polymerase activity regulation of DNA metabolic process regulation of DNA replication cellular response to stimulus response to stimulus cellular response to stress DNA damage response response to stress DNA repair cellular component organization DNA duplex unwinding organelle organization DNA geometric change chromosome organization DNA conformation change cellular component organization or biogenesis	intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure DNA replication factor C complex organelle membraneless organelle replication fork intracellular membraneless organelle chromosome membrane-bounded organelle Ctf18 RFC-like complex nucleus nuclear protein-containing complex intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure DNA replication factor C complex organelle membraneless organelle replication fork intracellular membraneless organelle chromosome membrane-bounded organelle Ctf18 RFC-like complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle Elg1 RFC-like complex catalytic complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
E	Replication factor C subunit 3	DNA binding binding organic cyclic compound binding nucleic acid binding ATP-dependent activity, acting on DNA catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid DNA clamp loader activity catalytic activity ATP-dependent activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides DNA binding binding organic cyclic compound binding nucleic acid binding ATP-dependent activity, acting on DNA catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid DNA clamp loader activity catalytic activity ATP-dependent activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process DNA-templated DNA replication DNA strand elongation DNA strand elongation involved in DNA replication regulation of cellular process regulation of catalytic activity positive regulation of biological process nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process DNA-templated DNA replication DNA strand elongation DNA strand elongation involved in DNA replication regulation of cellular process regulation of catalytic activity positive regulation of biological process regulation of transferase activity regulation of DNA biosynthetic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleic acid biosynthetic process positive regulation of metabolic process positive regulation of molecular function positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of biological process positive regulation of nucleobase-containing compound metabolic process positive regulation of transferase activity biological regulation positive regulation of catalytic activity positive regulation of DNA biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process regulation of molecular function regulation of DNA-directed DNA polymerase activity biosynthetic process positive regulation of DNA metabolic process regulation of DNA-templated DNA replication regulation of macromolecule biosynthetic process regulation of metabolic process DNA biosynthetic process positive regulation of DNA-directed DNA polymerase activity regulation of DNA metabolic process regulation of DNA replication cellular response to stimulus response to stimulus cellular response to stress DNA damage response response to stress DNA repair response to chemical response to organophosphorus DNA synthesis involved in DNA repair cellular component organization DNA duplex unwinding organelle organization DNA geometric change chromosome organization DNA conformation change cellular component organization or biogenesis	intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure DNA replication factor C complex organelle membraneless organelle replication fork intracellular membraneless organelle chromosome membrane-bounded organelle Ctf18 RFC-like complex nucleus nuclear protein-containing complex intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure DNA replication factor C complex organelle membraneless organelle replication fork intracellular membraneless organelle chromosome membrane-bounded organelle Ctf18 RFC-like complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
F, G, H	Proliferating cell nuclear antigen	protein-containing complex binding binding hydrolase activity, acting on glycosyl bonds catalytic activity, acting on DNA purine-specific mismatch base pair DNA N-glycosylase activity catalytic activity, acting on a nucleic acid hydrolase activity DNA N-glycosylase activity hydrolase activity, hydrolyzing N-glycosyl compounds catalytic activity mismatch base pair DNA N-glycosylase activity protein tyrosine kinase binding protein binding kinase binding protein-containing complex binding binding hydrolase activity, acting on glycosyl bonds catalytic activity, acting on DNA purine-specific mismatch base pair DNA N-glycosylase activity catalytic activity, acting on a nucleic acid hydrolase activity DNA N-glycosylase activity hydrolase activity, hydrolyzing N-glycosyl compounds catalytic activity mismatch base pair DNA N-glycosylase activity protein tyrosine kinase binding protein binding kinase binding signaling receptor binding receptor tyrosine kinase binding enzyme binding protein kinase binding identical protein binding chromatin binding DNA binding DNA insertion or deletion binding double-stranded DNA binding organic cyclic compound binding mismatched DNA binding dinucleotide insertion or deletion binding nucleic acid binding mismatch repair complex binding MutLalpha complex binding damaged DNA binding histone acetyltransferase binding enzyme regulator activity DNA polymerase processivity factor activity enzyme activator activity molecular function activator activity molecular function regulator activity transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding DNA-binding transcription factor binding nuclear estrogen receptor binding DNA polymerase binding	developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process DNA replication metabolic process cellular process macromolecule metabolic process replication fork processing leading strand elongation DNA strand elongation DNA strand elongation involved in DNA replication ovulation cycle rhythmic process estrous cycle reproductive process multicellular organismal reproductive process cellular response to stimulus mismatch repair response to stimulus cellular response to stress DNA damage response response to stress DNA repair regulation of cellular process positive regulation of DNA replication positive regulation of biological process regulation of primary metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process positive regulation of nucleobase-containing compound metabolic process regulation of biological process biological regulation regulation of macromolecule metabolic process positive regulation of DNA metabolic process regulation of metabolic process regulation of DNA metabolic process regulation of DNA replication epithelium development cellular developmental process cell differentiation tissue development epithelial cell differentiation translesion synthesis postreplication repair nucleobase-containing compound biosynthetic process DNA synthesis involved in DNA repair macromolecule biosynthetic process nucleic acid biosynthetic process biosynthetic process DNA biosynthetic process regulation of cellular response to stress positive regulation of response to stimulus positive regulation of DNA repair regulation of response to stress regulation of DNA repair regulation of response to stimulus response to ketone response to lipid response to endogenous stimulus response to glucocorticoid response to oxygen-containing compound response to corticosteroid response to hormone response to steroid hormone response to chemical response to dexamethasone response to organic cyclic compound response to acid chemical response to nitrogen compound response to L-glutamate response to amino acid cellular response to chemical stimulus cellular response to xenobiotic stimulus response to xenobiotic stimulus nuclear DNA replication telomere organization cell cycle DNA replication mitotic cell cycle telomere maintenance via semi-conservative replication cellular component organization mitotic telomere maintenance via semi-conservative replication cell cycle cellular component organization or biogenesis cell cycle process chromosome organization telomere maintenance organelle organization mitotic cell cycle process negative regulation of biological process RNA metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process gene expression regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process regulation of catalytic activity positive regulation of molecular function regulation of deoxyribonuclease activity regulation of nuclease activity positive regulation of deoxyribonuclease activity positive regulation of nuclease activity positive regulation of catalytic activity regulation of molecular function positive regulation of hydrolase activity regulation of hydrolase activity regulation of transferase activity regulation of DNA biosynthetic process positive regulation of macromolecule biosynthetic process positive regulation of biosynthetic process positive regulation of transferase activity positive regulation of DNA biosynthetic process regulation of DNA-directed DNA polymerase activity regulation of DNA-templated DNA replication positive regulation of DNA-directed DNA polymerase activity gland development animal organ regeneration liver development regeneration hepaticobiliary system development liver regeneration cellular response to oxidative stress cellular response to chemical stress cellular response to oxygen-containing compound cellular response to hydrogen peroxide response to reactive oxygen species response to hydrogen peroxide response to oxidative stress cellular response to reactive oxygen species response to light stimulus cellular response to radiation response to UV cellular response to environmental stimulus cellular response to light stimulus response to radiation response to abiotic stimulus cellular response to abiotic stimulus cellular response to UV base-excision repair, gap-filling base-excision repair response to metal ion response to cadmium ion response to estradiol	protein kinase complex transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex serine/threonine protein kinase complex cyclin-dependent protein kinase holoenzyme complex transferase complex extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle protein kinase complex transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex serine/threonine protein kinase complex cyclin-dependent protein kinase holoenzyme complex transferase complex extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular organelle intracellular anatomical structure membraneless organelle intracellular membraneless organelle chromatin chromosome PCNA complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle enzyme activator complex DNA polymerase processivity factor complex male germ cell nucleus germ cell nucleus membrane-enclosed lumen nuclear replication fork nuclear chromosome intracellular organelle lumen organelle lumen replication fork nuclear lumen chromosome, telomeric region chromosomal region PCNA-p21 complex centrosome microtubule organizing center cytoskeleton microtubule cytoskeleton nucleoplasm nuclear periphery nuclear lamina nuclear body protein-DNA complex replisome
I	DNA (40-MER)	-	-	-
J	DNA (20-MER)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR047854	Replication factor C, lid domain	Domain
A	IPR003593	AAA+ ATPase domain	Domain
A	IPR003959	ATPase, AAA-type, core	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B	IPR050238	DNA Replication and Repair Clamp Loader Complex	Family
B	IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	Homologous Superfamily
B	IPR013748	Replication factor C, C-terminal	Domain
B	IPR047854	Replication factor C, lid domain	Domain
B	IPR003593	AAA+ ATPase domain	Domain
B	IPR003959	ATPase, AAA-type, core	Domain
B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
C	IPR050238	DNA Replication and Repair Clamp Loader Complex	Family
C	IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	Homologous Superfamily
C	IPR013748	Replication factor C, C-terminal	Domain
C	IPR047854	Replication factor C, lid domain	Domain
C	IPR003593	AAA+ ATPase domain	Domain
C	IPR003959	ATPase, AAA-type, core	Domain
C	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
D	IPR050238	DNA Replication and Repair Clamp Loader Complex	Family
D	IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	Homologous Superfamily
D	IPR013748	Replication factor C, C-terminal	Domain
D	IPR047854	Replication factor C, lid domain	Domain
D	IPR003593	AAA+ ATPase domain	Domain
D	IPR003959	ATPase, AAA-type, core	Domain
D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
E	IPR050238	DNA Replication and Repair Clamp Loader Complex	Family
E	IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	Homologous Superfamily
E	IPR003593	AAA+ ATPase domain	Domain
E	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
F, G, H	IPR046938	DNA clamp superfamily	Homologous Superfamily
F, G, H	IPR022648	Proliferating cell nuclear antigen, PCNA, N-terminal	Domain
F, G, H	IPR000730	Proliferating cell nuclear antigen, PCNA	Family
F, G, H	IPR022649	Proliferating cell nuclear antigen, PCNA, C-terminal	Domain
F, G, H	IPR022659	Proliferating cell nuclear antigen, PCNA, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q8WVB6	adrenal cortex carcinoma lung adenocarcinoma pancreatic ductal adenocarcinoma bone disease medulloblastoma breast cancer osteosarcoma
B	Pharos: P35250	Williams syndrome diabetes mellitus malignant mesothelioma systemic lupus erythematosus glioblastoma medulloblastoma malignant glioma non-small cell lung carcinoma
C	Pharos: P40937	pancreatic intraductal papillary-mucinous neoplasm psoriasis adrenal cortex carcinoma B-cell chronic lymphocytic leukemia endogenous depression lung cancer malignant mesothelioma non-small cell lung carcinoma ovarian cancer Parkinson disease astrocytic tumor bipolar disorder glioblastoma malignant ependymoma medulloblastoma pancreatic intraductal papillary-mucinous neoplasm psoriasis adrenal cortex carcinoma B-cell chronic lymphocytic leukemia endogenous depression lung cancer malignant mesothelioma non-small cell lung carcinoma ovarian cancer Parkinson disease astrocytic tumor bipolar disorder glioblastoma malignant ependymoma medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor ductal breast carcinoma in situ large cell medulloblastoma malignant glioma nasopharyngeal carcinoma osteosarcoma
D	Pharos: P35249	Adenocarcinoma of Lung lung adenocarcinoma non-small cell lung carcinoma primitive neuroectodermal tumor adrenal cortex carcinoma glioblastoma lung cancer medulloblastoma osteosarcoma atypical teratoid rhabdoid tumor large cell medulloblastoma malignant mesothelioma nasopharyngeal carcinoma ovarian cancer
E	Pharos: P40938	acute myeloid leukemia lung cancer malignant mesothelioma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor malignant colon neoplasm medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm psoriasis large cell medulloblastoma malignant glioma nasopharyngeal carcinoma acute myeloid leukemia lung cancer malignant mesothelioma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor malignant colon neoplasm medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm psoriasis large cell medulloblastoma malignant glioma nasopharyngeal carcinoma ovarian cancer pituitary cancer
F, G, H	Pharos: P12004	psoriasis ataxia-telangiectasia-like disorder 2 hepatoblastoma adenocarcinoma malignant colon neoplasm granular cell carcinoma Radiation Injuries, Experimental tubular adenocarcinoma focal segmental glomerulosclerosis pancreatic intraductal papillary-mucinous neoplasm endometriosis primitive neuroectodermal tumor glioblastoma pustulosis palmaris et plantaris Sjogren syndrome psoriasis ataxia-telangiectasia-like disorder 2 hepatoblastoma adenocarcinoma malignant colon neoplasm granular cell carcinoma Radiation Injuries, Experimental tubular adenocarcinoma focal segmental glomerulosclerosis pancreatic intraductal papillary-mucinous neoplasm endometriosis primitive neuroectodermal tumor glioblastoma pustulosis palmaris et plantaris Sjogren syndrome large cell medulloblastoma astrocytic tumor lung cancer nasopharyngeal carcinoma neurodegenerative disease colonic neoplasm ovarian cancer dermatomyositis pituitary cancer IgA glomerulonephritis ischemic disease lung adenocarcinoma ataxia-telangiectasia-like disorder malignant glioma atypical teratoid rhabdoid tumor medulloblastoma brain cancer breast cancer non-small cell lung carcinoma cribriform carcinoma pancreatic intraductal papillary-mucinous carcinoma ductal breast carcinoma in situ invasive ductal breast carcinoma juvenile dermatomyositis lung benign neoplasm ataxia-telangiectasia-like disorder 1 lymphoplasmacytic lymphoma benign colon neoplasm myopathy breast carcinoma oligodendroglioma cribriform carcinoma of breast