8U4L

Structure of the HER2/HER4/NRG1b Heterodimer Extracellular Domain


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyGrowth factor receptor domain-like 8043692 3000398 SCOP2B (2021-05-27)
BSCOP2B SuperfamilyGrowth factor receptor domain-like 8043694 3000398 SCOP2B (2021-05-27)
BSCOP2B SuperfamilyL domain-like 8043690 3001010 SCOP2B (2021-05-27)
BSCOP2B SuperfamilyL domain-like 8043691 3001010 SCOP2B (2021-05-27)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00757Furin-like cysteine rich region (Furin-like)Furin-like cysteine rich region- Domain
PF01030Receptor L domain (Recep_L_domain)Receptor L domain- Repeat
PF14843Growth factor receptor domain IV (GF_recep_IV)Growth factor receptor domain IVThis is the fourth extracellular domain of receptor tyrosine protein kinases. Interaction between this domain and the furin-like domain (Pfam:PF00757) regulates the binding of ligands to the receptor L domains (Pfam:PF01030) [1].Domain
PF00757Furin-like cysteine rich region (Furin-like)Furin-like cysteine rich region- Domain
PF01030Receptor L domain (Recep_L_domain)Receptor L domain- Repeat
PF14843Growth factor receptor domain IV (GF_recep_IV)Growth factor receptor domain IVThis is the fourth extracellular domain of receptor tyrosine protein kinases. Interaction between this domain and the furin-like domain (Pfam:PF00757) regulates the binding of ligands to the receptor L domains (Pfam:PF01030) [1].Domain
PF00008EGF-like domain (EGF)EGF-like domainThere is no clear separation between noise and signal. Pfam:PF00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is t ...There is no clear separation between noise and signal. Pfam:PF00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Receptor tyrosine-protein kinase erbB-2
Isoform JM-A CYT-1 of Receptor tyrosine-protein kinase erbB-4
Isoform 6 of Pro-neuregulin-1, membrane-bound isoform

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR016245Tyrosine protein kinase, EGF/ERB/XmrK receptorFamily
IPR008266Tyrosine-protein kinase, active siteActive Site
IPR020635Tyrosine-protein kinase, catalytic domainDomain
IPR000719Protein kinase domainDomain
IPR036941Receptor L-domain superfamilyHomologous Superfamily
IPR032778Growth factor receptor domain 4Domain
IPR049328Epidermal growth factor receptor-like, transmembrane-juxtamembrane segmentDomain
IPR006212Furin-like repeatRepeat
IPR000494Receptor L-domainDomain
IPR017441Protein kinase, ATP binding siteBinding Site
IPR001245Serine-threonine/tyrosine-protein kinase, catalytic domainDomain
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
IPR006211Furin-like cysteine-rich domainDomain
IPR009030Growth factor receptor cysteine-rich domain superfamilyHomologous Superfamily
IPR016245Tyrosine protein kinase, EGF/ERB/XmrK receptorFamily
IPR008266Tyrosine-protein kinase, active siteActive Site
IPR020635Tyrosine-protein kinase, catalytic domainDomain
IPR000719Protein kinase domainDomain
IPR036941Receptor L-domain superfamilyHomologous Superfamily
IPR032778Growth factor receptor domain 4Domain
IPR049328Epidermal growth factor receptor-like, transmembrane-juxtamembrane segmentDomain
IPR006212Furin-like repeatRepeat
IPR000494Receptor L-domainDomain
IPR017441Protein kinase, ATP binding siteBinding Site
IPR001245Serine-threonine/tyrosine-protein kinase, catalytic domainDomain
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
IPR006211Furin-like cysteine-rich domainDomain
IPR009030Growth factor receptor cysteine-rich domain superfamilyHomologous Superfamily
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR007110Immunoglobulin-like domainDomain
IPR003599Immunoglobulin subtypeDomain
IPR040180NeuregulinFamily
IPR003598Immunoglobulin subtype 2Domain
IPR000742EGF-like domainDomain
IPR013098Immunoglobulin I-setDomain
IPR018250Neuregulin-1Family
IPR002154Neuregulin, C-terminalDomain