8TVU

In situ cryo-EM structure of bacteriophage P22 portal protein: head-to-tail protein complex at 3.0A resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth a]	PF11650	e8tvua1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
D [auth C]	PF11650	e8tvuC1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
F [auth E]	PF11650	e8tvuE1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
H [auth G]	PF11650	e8tvuG1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
J [auth I]	PF11650	e8tvuI1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
L [auth K]	PF11650	e8tvuK1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
N [auth M]	PF11650	e8tvuM1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
P [auth O]	PF11650	e8tvuO1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
R [auth Q]	PF11650	e8tvuQ1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
T [auth S]	PF11650	e8tvuS1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
V	PF11650	e8tvuV1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
X	PF11650	e8tvuX1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B], E [auth D], G [auth F], I [auth H], A, C [auth B], E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R], U [auth T], W	PF11650	P22 tail accessory factor (P22_Tail-4)	P22 tail accessory factor	-	Family
A, C [auth B], E [auth D], G [auth F], I [auth H], A, C [auth B], E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R], U [auth T], W	PF16510	Phage P22-like portal protein (P22_portal)	Phage P22-like portal protein	-	Family
B [auth a], D [auth C], F [auth E], H [auth G], J [auth I], B [auth a], D [auth C], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q], T [auth S], V, X	PF11650	P22 tail accessory factor (P22_Tail-4)	P22 tail accessory factor	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth B], E [auth D], G [auth F], I [auth H], A, C [auth B], E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R], U [auth T], W	Portal protein	-	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism biological process involved in interaction with host biological process involved in symbiotic interaction viral DNA genome packaging, headful	protein-containing complex viral capsid virion component viral portal complex
B [auth a], D [auth C], F [auth E], H [auth G], J [auth I], B [auth a], D [auth C], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q], T [auth S], V, X	Peptidoglycan hydrolase gp4	hydrolase activity catalytic activity	symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms viral life cycle disruption of cell wall in another organism symbiont-mediated disruption of host cell wall symbiont-mediated disruption of host cell envelope biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell via disruption of host cell wall peptidoglycan disruption of cellular anatomical structure in another organism symbiont-mediated disruption of host cellular anatomical entity symbiont entry into host cell viral process symbiont entry into host symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms viral life cycle disruption of cell wall in another organism symbiont-mediated disruption of host cell wall symbiont-mediated disruption of host cell envelope biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell via disruption of host cell wall peptidoglycan disruption of cellular anatomical structure in another organism symbiont-mediated disruption of host cellular anatomical entity symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism symbiont genome ejection through host cell envelope symbiont genome ejection through host cell envelope, short tail mechanism symbiont entry into host cell via disruption of host cell envelope	virus tail virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth B], E [auth D], G [auth F], I [auth H], A, C [auth B], E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R], U [auth T], W	IPR032427	Phage P22-like portal protein	Family
B [auth a], D [auth C], F [auth E], H [auth G], J [auth I], B [auth a], D [auth C], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q], T [auth S], V, X	IPR038258	Peptidoglycan hydrolase Gp4 superfamily	Homologous Superfamily
B [auth a], D [auth C], F [auth E], H [auth G], J [auth I], B [auth a], D [auth C], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q], T [auth S], V, X	IPR020362	Tail accessory factor GP4	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.