8TVR

In situ cryo-EM structure of bacteriophage P22 tail hub protein: tailspike protein complex at 2.8A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)
B	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)
C	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)
E [auth D]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)
F [auth E]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)
G [auth F]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)
I [auth H]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)
J [auth I]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)
K [auth J]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)
M [auth L]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)
N [auth M]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)
O [auth N]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)
Q [auth P]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)
R [auth Q]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)
S [auth R]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)
U [auth V]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)
V [auth W]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)
W [auth X]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF09008	e8tvrA1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)
B	PF09008	e8tvrB1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)
C	PF09008	e8tvrC1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)
E [auth D]	PF09008	e8tvrD1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)
F [auth E]	PF09008	e8tvrE1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)
G [auth F]	PF09008	e8tvrF1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)
I [auth H]	PF09008	e8tvrH1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)
J [auth I]	PF09008	e8tvrI1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)
K [auth J]	PF09008	e8tvrJ1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)
M [auth L]	PF09008	e8tvrL1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)
N [auth M]	PF09008	e8tvrM1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)
O [auth N]	PF09008	e8tvrN1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)
Q [auth P]	PF09008	e8tvrP1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)
R [auth Q]	PF09008	e8tvrQ1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)
S [auth R]	PF09008	e8tvrR1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)
U [auth V]	PF09008	e8tvrV1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)
V [auth W]	PF09008	e8tvrW1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)
W [auth X]	PF09008	e8tvrX1	A: beta sandwiches	X: Head-binding domain of phage P22 tailspike protein (From Topology)	H: Head-binding domain of phage P22 tailspike protein (From Topology)	T: Head-binding domain of phage P22 tailspike protein	F: PF09008	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, E [auth D], F [auth E], A, B, C, E [auth D], F [auth E], G [auth F], I [auth H], J [auth I], K [auth J], M [auth L], N [auth M], O [auth N], Q [auth P], R [auth Q], S [auth R], U [auth V], V [auth W], W [auth X]	PF09251	Salmonella phage P22 tail-spike (PhageP22-tail)	Salmonella phage P22 tail-spike	-	Repeat
D [auth S], H [auth G], L [auth K], P [auth O], T, D [auth S], H [auth G], L [auth K], P [auth O], T, X [auth Y]	PF11134	Phage stabilisation protein (Phage_stabilise)	Phage stabilisation protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, E [auth D], F [auth E], A, B, C, E [auth D], F [auth E], G [auth F], I [auth H], J [auth I], K [auth J], M [auth L], N [auth M], O [auth N], Q [auth P], R [auth Q], S [auth R], U [auth V], V [auth W], W [auth X]	Tail spike protein	hydrolase activity, acting on glycosyl bonds endo-1,3-alpha-L-rhamnosidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity	biological process involved in interspecies interaction between organisms symbiont entry into host biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host symbiont-mediated disruption of host anatomical structure symbiont-mediated disruption of host cell envelope symbiont entry into host cell via disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical entity symbiont entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host symbiont-mediated disruption of host anatomical structure symbiont-mediated disruption of host cell envelope symbiont entry into host cell via disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical entity symbiont entry into host cell disruption of anatomical structure in another organism metabolic process symbiont entry into host cell via disruption of host cell envelope lipopolysaccharide disruption of cell wall in another organism symbiont-mediated disruption of host cell wall disruption of cellular anatomical structure in another organism receptor-mediated virion attachment to host cell adhesion receptor-mediated virion attachment to host cell	virus tail, fiber virus tail virion component
D [auth S], H [auth G], L [auth K], P [auth O], T, D [auth S], H [auth G], L [auth K], P [auth O], T, X [auth Y]	Packaged DNA stabilization protein gp10	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, E [auth D], F [auth E], A, B, C, E [auth D], F [auth E], G [auth F], I [auth H], J [auth I], K [auth J], M [auth L], N [auth M], O [auth N], Q [auth P], R [auth Q], S [auth R], U [auth V], V [auth W], W [auth X]	IPR036730	Phage P22 tailspike-like, N-terminal domain superfamily	Homologous Superfamily
A, B, C, E [auth D], F [auth E], A, B, C, E [auth D], F [auth E], G [auth F], I [auth H], J [auth I], K [auth J], M [auth L], N [auth M], O [auth N], Q [auth P], R [auth Q], S [auth R], U [auth V], V [auth W], W [auth X]	IPR012332	Autotransporter, pectate lyase C-like domain superfamily	Homologous Superfamily
A, B, C, E [auth D], F [auth E], A, B, C, E [auth D], F [auth E], G [auth F], I [auth H], J [auth I], K [auth J], M [auth L], N [auth M], O [auth N], Q [auth P], R [auth Q], S [auth R], U [auth V], V [auth W], W [auth X]	IPR015331	P22 tailspike C-terminal domain	Domain
A, B, C, E [auth D], F [auth E], A, B, C, E [auth D], F [auth E], G [auth F], I [auth H], J [auth I], K [auth J], M [auth L], N [auth M], O [auth N], Q [auth P], R [auth Q], S [auth R], U [auth V], V [auth W], W [auth X]	IPR009093	Bacteriophage P22 tailspike, N-terminal	Domain
A, B, C, E [auth D], F [auth E], A, B, C, E [auth D], F [auth E], G [auth F], I [auth H], J [auth I], K [auth J], M [auth L], N [auth M], O [auth N], Q [auth P], R [auth Q], S [auth R], U [auth V], V [auth W], W [auth X]	IPR011050	Pectin lyase fold/virulence factor	Homologous Superfamily
D [auth S], H [auth G], L [auth K], P [auth O], T, D [auth S], H [auth G], L [auth K], P [auth O], T, X [auth Y]	IPR021098	Bacteriophage P22, Gp10, DNA-stabilising	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.