Annotations: 8TPJ

Top cylinder bound to OCP from high-resolution phycobilisome quenched by OCP (local refinement)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth E]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
J [auth I]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
L [auth K]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
N [auth M]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)
P [auth O]	SCOP2B Superfamily	Globin-like	8099078	3000554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CoV_NSP10	e8tpjA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
B	CoV_NSP10	e8tpjB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
C [auth b]	CoV_NSP10	e8tpjb1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
D [auth C]	CoV_NSP10	e8tpjC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
Q [auth P]	CoV_NSP10	e8tpjP1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
R [auth Q]	CoV_NSP10	e8tpjQ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
S [auth R]	CoV_NSP10	e8tpjR1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
T [auth S]	CoV_NSP10	e8tpjS1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
F [auth E]	CoV_NSP10	e8tpjE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
H [auth G]	CoV_NSP10	e8tpjG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
J [auth I]	CoV_NSP10	e8tpjI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
L [auth K]	CoV_NSP10	e8tpjK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
N [auth M]	CoV_NSP10	e8tpjM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
P [auth O]	CoV_NSP10	e8tpjO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
E [auth D]	CoV_NSP10	e8tpjD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
K [auth J]	CoV_NSP10	e8tpjJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
M [auth L]	CoV_NSP10	e8tpjL1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
O [auth N]	CoV_NSP10	e8tpjN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
I [auth H]	CoV_NSP10	e8tpjH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
G [auth F]	CoV_NSP10	e8tpjF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00427	Phycobilisome Linker polypeptide (PBS_linker_poly)	Phycobilisome Linker polypeptide	-	Family
B, C [auth b]	PF02136	Nuclear transport factor 2 (NTF2) domain (NTF2)	Nuclear transport factor 2 (NTF2) domain	This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins.	Domain
D [auth C]	PF01383	CpcD/allophycocyanin linker domain (CpcD)	CpcD/allophycocyanin linker domain		Domain
F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Phycobiliprotein ApcE	lyase activity catalytic activity	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
B, C [auth b]	Orange carotenoid-binding protein	molecular transducer activity photoreceptor activity signaling receptor activity ion binding binding anion binding chloride ion binding small molecule binding	detection of light stimulus response to light stimulus detection of external stimulus response to stimulus response to external stimulus detection of abiotic stimulus detection of stimulus light absorption response to abiotic stimulus response to radiation cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
D [auth C]	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
Q [auth P], R [auth Q], S [auth R], T [auth S]	Phycobilisome rod-core linker polypeptide CpcG	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O]	Allophycocyanin beta chain	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N]	Allophycocyanin alpha chain	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A	IPR001297	Phycobilisome linker domain	Domain
A	IPR009050	Globin-like superfamily	Homologous Superfamily
A	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily
A	IPR012128	Phycobilisome, alpha/beta subunit	Family
B, C [auth b]	IPR015233	Orange carotenoid-binding protein, N-terminal	Domain
B, C [auth b]	IPR032710	NTF2-like domain superfamily	Homologous Superfamily
B, C [auth b]	IPR002075	Nuclear transport factor 2 domain	Domain
B, C [auth b]	IPR036917	Orange carotenoid-binding protein, N-terminal domain superfamily	Homologous Superfamily
D [auth C]	IPR011064	Allophycocyanin linker chain	Homologous Superfamily
D [auth C]	IPR011134	Allophycocyanin linker protein	Family
D [auth C]	IPR008213	CpcD-like domain	Domain
Q [auth P], R [auth Q], S [auth R], T [auth S]	IPR016470	Phycobilisome linker protein	Family
Q [auth P], R [auth Q], S [auth R], T [auth S]	IPR001297	Phycobilisome linker domain	Domain
Q [auth P], R [auth Q], S [auth R], T [auth S]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily
F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O]	IPR006245	Allophycocyanin, beta subunit	Family
F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O]	IPR009050	Globin-like superfamily	Homologous Superfamily
F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O]	IPR012128	Phycobilisome, alpha/beta subunit	Family
E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N]	IPR009050	Globin-like superfamily	Homologous Superfamily
E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N]	IPR012128	Phycobilisome, alpha/beta subunit	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O]	MEN	Parent Component: ASN : AA0070 : N4-methyl-L-asparagine MOD:00079