Annotations: 8TO5

Central rod disk in C1 symmetry of high-resolution phycobilisome quenched by OCP (local refinement)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth M]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
C [auth O]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
E [auth Q]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
G [auth S]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
I [auth U]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
K [auth W]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
D [auth P]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
F [auth R]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
H [auth T]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
J [auth V]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
L [auth X]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
B [auth N]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
M [auth b]	SCOP2B Superfamily	Phycobilisome linker domain-like	8052316	3002104	SCOP2B (2022-06-29)
M [auth b]	SCOP2B Superfamily	Phycobilisome linker domain-like	8052317	3002104	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth M]	WD40	e8to5M1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C [auth O]	WD40	e8to5O1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
E [auth Q]	WD40	e8to5Q1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
G [auth S]	WD40	e8to5S1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
I [auth U]	WD40	e8to5U1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
K [auth W]	WD40	e8to5W1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
D [auth P]	WD40	e8to5P1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
F [auth R]	WD40	e8to5R1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
H [auth T]	WD40	e8to5T1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
J [auth V]	WD40	e8to5V1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
L [auth X]	WD40	e8to5X1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B [auth N]	WD40	e8to5N1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
N [auth c]	WD40	e8to5c1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
M [auth b]	WD40	e8to5b1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], K [auth W]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], L [auth X]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], K [auth W]	C-phycocyanin alpha subunit	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], L [auth X]	C-phycocyanin beta subunit	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
N [auth c]	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 2	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
M [auth b]	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 1	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], K [auth W]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], K [auth W]	IPR006246	Phycocyanin, alpha subunit	Family
A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], K [auth W]	IPR009050	Globin-like superfamily	Homologous Superfamily
A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], K [auth W]	IPR012128	Phycobilisome, alpha/beta subunit	Family
B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], L [auth X]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], L [auth X]	IPR006247	Phycocyanin, beta subunit	Family
B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], L [auth X]	IPR009050	Globin-like superfamily	Homologous Superfamily
B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], L [auth X]	IPR012128	Phycobilisome, alpha/beta subunit	Family
N [auth c]	IPR016470	Phycobilisome linker protein	Family
N [auth c]	IPR008213	CpcD-like domain	Domain
N [auth c]	IPR001297	Phycobilisome linker domain	Domain
N [auth c]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily
M [auth b]	IPR016470	Phycobilisome linker protein	Family
M [auth b]	IPR008213	CpcD-like domain	Domain
M [auth b]	IPR001297	Phycobilisome linker domain	Domain
M [auth b]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], L [auth X]	MEN	Parent Component: ASN : AA0070 : N4-methyl-L-asparagine MOD:00079

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.