8TFC

Cryo-EM structure of Methanosarcina mazie glutamine synthetase captured as partial oligomer

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF03951	e8tfcA1	A: beta barrels	X: Ribosomal protein L25-like	H: Glutamine synthetase, N-terminal domain (From Topology)	T: Glutamine synthetase, N-terminal domain	F: PF03951	ECOD (1.6)
A	PF00120	e8tfcA2	A: a+b two layers	X: Glutamine synthetase-like	H: Glutamine synthetase/guanido kinase (From Topology)	T: Glutamine synthetase/guanido kinase	F: PF00120	ECOD (1.6)
B	PF03951	e8tfcB1	A: beta barrels	X: Ribosomal protein L25-like	H: Glutamine synthetase, N-terminal domain (From Topology)	T: Glutamine synthetase, N-terminal domain	F: PF03951	ECOD (1.6)
B	PF00120	e8tfcB2	A: a+b two layers	X: Glutamine synthetase-like	H: Glutamine synthetase/guanido kinase (From Topology)	T: Glutamine synthetase/guanido kinase	F: PF00120	ECOD (1.6)
C [auth D]	PF03951	e8tfcD1	A: beta barrels	X: Ribosomal protein L25-like	H: Glutamine synthetase, N-terminal domain (From Topology)	T: Glutamine synthetase, N-terminal domain	F: PF03951	ECOD (1.6)
C [auth D]	PF00120	e8tfcD2	A: a+b two layers	X: Glutamine synthetase-like	H: Glutamine synthetase/guanido kinase (From Topology)	T: Glutamine synthetase/guanido kinase	F: PF00120	ECOD (1.6)
D [auth L]	PF03951	e8tfcL1	A: beta barrels	X: Ribosomal protein L25-like	H: Glutamine synthetase, N-terminal domain (From Topology)	T: Glutamine synthetase, N-terminal domain	F: PF03951	ECOD (1.6)
D [auth L]	PF00120	e8tfcL2	A: a+b two layers	X: Glutamine synthetase-like	H: Glutamine synthetase/guanido kinase (From Topology)	T: Glutamine synthetase/guanido kinase	F: PF00120	ECOD (1.6)
E [auth O]	PF03951	e8tfcO1	A: beta barrels	X: Ribosomal protein L25-like	H: Glutamine synthetase, N-terminal domain (From Topology)	T: Glutamine synthetase, N-terminal domain	F: PF03951	ECOD (1.6)
E [auth O]	PF00120	e8tfcO2	A: a+b two layers	X: Glutamine synthetase-like	H: Glutamine synthetase/guanido kinase (From Topology)	T: Glutamine synthetase/guanido kinase	F: PF00120	ECOD (1.6)
F [auth P]	PF03951	e8tfcP2	A: beta barrels	X: Ribosomal protein L25-like	H: Glutamine synthetase, N-terminal domain (From Topology)	T: Glutamine synthetase, N-terminal domain	F: PF03951	ECOD (1.6)
F [auth P]	PF00120	e8tfcP1	A: a+b two layers	X: Glutamine synthetase-like	H: Glutamine synthetase/guanido kinase (From Topology)	T: Glutamine synthetase/guanido kinase	F: PF00120	ECOD (1.6)
G [auth Q]	PF03951	e8tfcQ1	A: beta barrels	X: Ribosomal protein L25-like	H: Glutamine synthetase, N-terminal domain (From Topology)	T: Glutamine synthetase, N-terminal domain	F: PF03951	ECOD (1.6)
G [auth Q]	PF00120	e8tfcQ2	A: a+b two layers	X: Glutamine synthetase-like	H: Glutamine synthetase/guanido kinase (From Topology)	T: Glutamine synthetase/guanido kinase	F: PF00120	ECOD (1.6)
H [auth V]	PF03951	e8tfcV1	A: beta barrels	X: Ribosomal protein L25-like	H: Glutamine synthetase, N-terminal domain (From Topology)	T: Glutamine synthetase, N-terminal domain	F: PF03951	ECOD (1.6)
H [auth V]	PF00120	e8tfcV2	A: a+b two layers	X: Glutamine synthetase-like	H: Glutamine synthetase/guanido kinase (From Topology)	T: Glutamine synthetase/guanido kinase	F: PF00120	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C [auth D], D [auth L], E [auth O], A, B, C [auth D], D [auth L], E [auth O], F [auth P], G [auth Q], H [auth V]	PF00120	Glutamine synthetase, catalytic domain (Gln-synt_C)	Glutamine synthetase, catalytic domain	-	Domain
A, B, C [auth D], D [auth L], E [auth O], A, B, C [auth D], D [auth L], E [auth O], F [auth P], G [auth Q], H [auth V]	PF03951	Glutamine synthetase, beta-Grasp domain (Gln-synt_N)	Glutamine synthetase, beta-Grasp domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth D], D [auth L], E [auth O], A, B, C [auth D], D [auth L], E [auth O], F [auth P], G [auth Q], H [auth V]	Glutamine synthetase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding acid-ammonia (or amide) ligase activity ammonia ligase activity glutamine synthetase activity catalytic activity ligase activity, forming carbon-nitrogen bonds ligase activity cation binding metal ion binding	organonitrogen compound catabolic process amine metabolic process organonitrogen compound metabolic process catabolic process cellular biogenic amine catabolic process metabolic process polyamine catabolic process polyamine metabolic process biogenic amine metabolic process amine catabolic process glutamine family amino acid biosynthetic process oxoacid metabolic process cellular biosynthetic process organonitrogen compound biosynthetic process organonitrogen compound catabolic process amine metabolic process organonitrogen compound metabolic process catabolic process cellular biogenic amine catabolic process metabolic process polyamine catabolic process polyamine metabolic process biogenic amine metabolic process amine catabolic process glutamine family amino acid biosynthetic process oxoacid metabolic process cellular biosynthetic process organonitrogen compound biosynthetic process amino acid metabolic process organic acid metabolic process organic acid biosynthetic process alpha-amino acid metabolic process carboxylic acid biosynthetic process glutamine family amino acid metabolic process small molecule metabolic process glutamine metabolic process small molecule biosynthetic process cellular metabolic process carboxylic acid metabolic process primary metabolic process L-amino acid biosynthetic process L-amino acid metabolic process proteinogenic amino acid metabolic process amino acid biosynthetic process biosynthetic process proteinogenic amino acid biosynthetic process cellular process glutamine biosynthetic process alpha-amino acid biosynthetic process	intracellular anatomical structure cytoplasm cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth D], D [auth L], E [auth O], A, B, C [auth D], D [auth L], E [auth O], F [auth P], G [auth Q], H [auth V]	IPR004809	Glutamine synthetase type I	Family
A, B, C [auth D], D [auth L], E [auth O], A, B, C [auth D], D [auth L], E [auth O], F [auth P], G [auth Q], H [auth V]	IPR008146	Glutamine synthetase, catalytic domain	Domain
A, B, C [auth D], D [auth L], E [auth O], A, B, C [auth D], D [auth L], E [auth O], F [auth P], G [auth Q], H [auth V]	IPR027303	Glutamine synthetase, glycine-rich site	Conserved Site
A, B, C [auth D], D [auth L], E [auth O], A, B, C [auth D], D [auth L], E [auth O], F [auth P], G [auth Q], H [auth V]	IPR027302	Glutamine synthetase, N-terminal conserved site	Conserved Site
A, B, C [auth D], D [auth L], E [auth O], A, B, C [auth D], D [auth L], E [auth O], F [auth P], G [auth Q], H [auth V]	IPR014746	Glutamine synthetase/guanido kinase, catalytic domain	Homologous Superfamily
A, B, C [auth D], D [auth L], E [auth O], A, B, C [auth D], D [auth L], E [auth O], F [auth P], G [auth Q], H [auth V]	IPR008147	Glutamine synthetase, N-terminal domain	Domain
A, B, C [auth D], D [auth L], E [auth O], A, B, C [auth D], D [auth L], E [auth O], F [auth P], G [auth Q], H [auth V]	IPR036651	Glutamine synthetase, N-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.