Annotations: 8SZN

Crystal structure of Neisseria meningitidis ClpP protease in complex with phosphine oxide compound ACP6-12

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
U [auth N]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
T [auth M]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
S [auth L]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
R [auth K]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
Q [auth J]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
P [auth I]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
O [auth H]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
N [auth G]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
M [auth F]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
L [auth E]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
K [auth D]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
J [auth C]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
I [auth B]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
H [auth A]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
G [auth b]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
F [auth a]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
E [auth Z]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
D [auth Y]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
C [auth X]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
B [auth W]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)
A [auth V]	SCOP2B Superfamily	ClpP/crotonase	8068487	3000033	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
U [auth N]	WD40	e8sznN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
T [auth M]	WD40	e8sznM1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
S [auth L]	WD40	e8sznL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
R [auth K]	WD40	e8sznK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Q [auth J]	WD40	e8sznJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
P [auth I]	WD40	e8sznI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
O [auth H]	WD40	e8sznH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
N [auth G]	WD40	e8sznG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
M [auth F]	WD40	e8sznF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
L [auth E]	WD40	e8sznE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
K [auth D]	WD40	e8sznD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
J [auth C]	WD40	e8sznC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
I [auth B]	WD40	e8sznB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
H [auth A]	WD40	e8sznA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
G [auth b]	WD40	e8sznb1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
F [auth a]	WD40	e8szna1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
E [auth Z]	WD40	e8sznZ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
D [auth Y]	WD40	e8sznY1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C [auth X]	WD40	e8sznX1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B [auth W]	WD40	e8sznW1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
A [auth V]	WD40	e8sznV1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth V], B [auth W], C [auth X], D [auth Y], E [auth Z], A [auth V], B [auth W], C [auth X], D [auth Y], E [auth Z], F [auth a], G [auth b], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N]	PF00574	Clp protease (CLP_protease)	Clp protease	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ...	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large insertions, Swiss:P42380 contains one large insertion.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth V], B [auth W], C [auth X], D [auth Y], E [auth Z], A [auth V], B [auth W], C [auth X], D [auth Y], E [auth Z], F [auth a], G [auth b], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N]	ATP-dependent Clp protease proteolytic subunit	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	catabolic process metabolic process cellular process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process protein quality control for misfolded or incompletely synthesized proteins macromolecule catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm endopeptidase Clp complex protein-containing complex catalytic complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth V], B [auth W], C [auth X], D [auth Y], E [auth Z], A [auth V], B [auth W], C [auth X], D [auth Y], E [auth Z], F [auth a], G [auth b], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A [auth V], B [auth W], C [auth X], D [auth Y], E [auth Z], A [auth V], B [auth W], C [auth X], D [auth Y], E [auth Z], F [auth a], G [auth b], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N]	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
A [auth V], B [auth W], C [auth X], D [auth Y], E [auth Z], A [auth V], B [auth W], C [auth X], D [auth Y], E [auth Z], F [auth a], G [auth b], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N]	IPR018215	ClpP, Ser active site	Active Site
A [auth V], B [auth W], C [auth X], D [auth Y], E [auth Z], A [auth V], B [auth W], C [auth X], D [auth Y], E [auth Z], F [auth a], G [auth b], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N]	IPR033135	ClpP, histidine active site	Active Site
A [auth V], B [auth W], C [auth X], D [auth Y], E [auth Z], A [auth V], B [auth W], C [auth X], D [auth Y], E [auth Z], F [auth a], G [auth b], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N]	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family

8SZN | pdb_00008szn

Crystal structure of Neisseria meningitidis ClpP protease in complex with phosphine oxide compound ACP6-12

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage