8SQN

CryoEM structure of Western equine encephalitis virus VLP in complex with the chimeric Du-D1-Mo-D2 MXRA8 receptor


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.Domain
B,
D [auth F],
F [auth J],
H [auth N]
PF01589Alphavirus E1 glycoprotein (Alpha_E1_glycop)Alphavirus E1 glycoprotein- Family
C [auth D],
E [auth H],
G [auth L],
I [auth P]
PF00943Alphavirus E2 glycoprotein (Alpha_E2_glycop)Alphavirus E2 glycoprotein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
DuD1MoD2 chimeric MXRA8-
B,
D [auth F],
F [auth J],
H [auth N]
E1 envelope glycoprotein
C [auth D],
E [auth H],
G [auth L],
I [auth P]
E2 envelope glycoprotein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR042472Matrix remodeling-associated protein 8Family
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR013106Immunoglobulin V-set domainDomain
IPR003599Immunoglobulin domain subtypeDomain
IPR007110Immunoglobulin-like domainDomain
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR042472Matrix remodeling-associated protein 8Family
IPR013106Immunoglobulin V-set domainDomain
IPR003599Immunoglobulin domain subtypeDomain
IPR007110Immunoglobulin-like domainDomain
B,
D [auth F],
F [auth J],
H [auth N]
IPR002533Alphavirus E3 spike glycoproteinDomain
B,
D [auth F],
F [auth J],
H [auth N]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
B,
D [auth F],
F [auth J],
H [auth N]
IPR014756Immunoglobulin E-setHomologous Superfamily
B,
D [auth F],
F [auth J],
H [auth N]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
B,
D [auth F],
F [auth J],
H [auth N]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
B,
D [auth F],
F [auth J],
H [auth N]
IPR009003Peptidase S1, PA clanHomologous Superfamily
B,
D [auth F],
F [auth J],
H [auth N]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
B,
D [auth F],
F [auth J],
H [auth N]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
B,
D [auth F],
F [auth J],
H [auth N]
IPR000936Alphavirus E2 glycoproteinFamily
B,
D [auth F],
F [auth J],
H [auth N]
IPR000930Peptidase S3, togavirinDomain
B,
D [auth F],
F [auth J],
H [auth N]
IPR002548Alphavirus E1 glycoproteinDomain
B,
D [auth F],
F [auth J],
H [auth N]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
B,
D [auth F],
F [auth J],
H [auth N]
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth D],
E [auth H],
G [auth L],
I [auth P]
IPR002533Alphavirus E3 spike glycoproteinDomain
C [auth D],
E [auth H],
G [auth L],
I [auth P]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
C [auth D],
E [auth H],
G [auth L],
I [auth P]
IPR014756Immunoglobulin E-setHomologous Superfamily
C [auth D],
E [auth H],
G [auth L],
I [auth P]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
C [auth D],
E [auth H],
G [auth L],
I [auth P]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
C [auth D],
E [auth H],
G [auth L],
I [auth P]
IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth D],
E [auth H],
G [auth L],
I [auth P]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
C [auth D],
E [auth H],
G [auth L],
I [auth P]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
C [auth D],
E [auth H],
G [auth L],
I [auth P]
IPR000936Alphavirus E2 glycoproteinFamily
C [auth D],
E [auth H],
G [auth L],
I [auth P]
IPR000930Peptidase S3, togavirinDomain
C [auth D],
E [auth H],
G [auth L],
I [auth P]
IPR002548Alphavirus E1 glycoproteinDomain
C [auth D],
E [auth H],
G [auth L],
I [auth P]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
C [auth D],
E [auth H],
G [auth L],
I [auth P]
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily